Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01280 ATGGAGAAAGaagagaaaaagaagacaaagggaaacataaagGATAACATGCCAACAGTGTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCTGAGCCTTCTGATGTTCATGACCCCAAAACAAGGAAACACTTGAGCACAATTTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCTAGGTCCATAGCAAATCTCAAAGATGTGATTCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTGATATTGAGCAACTCAAGGTGTGAGCTCAAGATCACTGGCTATGGAGGGTTCCAAGAAGGGGTTGGCAGTGCCAAtggtggtggtggcggtggcagtggtggtTCAACTTTTGTGGGGACTTTGAGGCCAGGGACTCCAGGCCCTGGAGGGCACCCTACAATGCACTACTTTAATCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCACCTTTCCTCTTAGCAGATAAAGAAGGGTCTGGTCCTCATGGTGGAGGACTTCATCCTAGCAATAGATTGTCTCTTGAGACAGATTCTAATGGGTCTTCAACTGTGACTTGCCACAAATGTGGAGAACAATTTAACAAATGGGATGCTGCTGAAGCTCATCATCTGTCCAAGCATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATCGTGGAGATCATATGCAGGACCAGCTGGTTAAAGTCTGAAAACCAGTGTGGTAGAATTGAGAGAGTTTTGAAGGTTCACAACATGCAAAAAACTCTTGCAAGGTTTGAAGAGTACAGGGAGATGGTGAAGATCAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGGTGTCTGGCTGATGGGAATGAGCTTCTGAGGTTCTATGGCACCACCGTGGCATGCTCTCTTGGCCTTAATGGCTCTTCTAGCCTCTGCCTATCAGAAAAGTGTTGTGTTTGCAGAATCATAAGGAATGGTTTTTCAGCCAAGAAGGAGCTCAAGGGTGGCATTGGAGTTTTCACAACATCCACAAGTGGAAGGGCTTTTGAGTCCATAGAGATCATTGGTGATGAACCATCACAGAGAAAAGCACTTATAGTATGCAGAGTAATTGCTGGCAGGGTTCATAGGCCACTTGAGAACATTCAGGAAATGGCAGCACAAACAGGATTCGACTCATTGGCTGGCAAAGTGGGTCTATATTCAAACATTGAGGAGCTGTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1326 0.4344 MEKEEKKKTKGNIKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSANGGGGGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLADKEGSGPHGGGLHPSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIIGDEPSQRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01280 441 MobiDBLite consensus disorder prediction 126 201 - -
Cca04g01280 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 18 441 - -
Cca04g01280 441 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
Cca04g01280 441 PANTHER - 18 441 - -
Cca04g01280 441 SUPERFAMILY ADP-ribosylation 232 440 - -
Cca04g01280 441 Gene3D - 232 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01280 Cca-Chr4 15761405 15764230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01280 17 441 C2H2 Transcription Factor Family AT5G54630 69.546 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g01280 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01280 - - gmx:100787790 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01280 04 15761405 15764230 Cca04g01280 04 15761405 15764230 ECH