Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01279 ATGGGAGTTCATAAACATATGGTTAACACAAAGATCAGCTTTGGTGTTCTTTTGGTTCTTCTTCTTGTAGCAGCAGTCAGCTCTATAGAAAAGAGGGAAACAGAAGATGATTTTGTTAGCGAGTTACTTGATCCAGCATCTGAATTGTTAGATGAGCACACGGCTAAGGTCTTATGGAAATATTGTGGGGAAGGTTTATTTCATTTAACGAAAGATTTTGAGGATCATCTGTGCCTCTCACATGAACTGTCTGGCCTCAGCAATAAAATCAGTTCAGAGATTCGACTACTAGCAGGAGAAGACATCCAAAAATTTATCAATGCTTACTGTCCTCAATTCAAGGAGAACTTTCTTTACTGTTTAAGAAAAAATAATCTTCCATTACCTGTCTCGGGGAAAGAGGATGATTTCAAGATTTGGCATGTCTCTTATATGGGTCCACTTTTTTCCAGATCCAGTGTTCCAGAAACAAATTTTGCTCGTGTTTTGCTCCAGCACATATCAGAACCACCTAGTTCAGGCCCTGCGGTTGGATCACCTACACCCAGTTTAACACCATCTCCTGAACCCAGTTTAGCACCATCATCTGAACCCAGTCTGGCCCCATCACCTCTTGCTCCAACGCCTCTAGTTCCCAGACCTCTGCAACCTTCTTTCCCACCATCATCTTTTTTCCCAAAATTGACACCACCATCATCAACTTCAGATATTTCGGCTCCTCCACTTTCTGACGTTAGCAATCAGGAAGATGGACATAGTAATAAAAAAAAAGTTGTTCTTGCTGTGGTTATAACTGCATTGGTGACATTTATAGCTGCAGCACTGCTCTTTTTATGCTGTAGTCGGTATCGTAAGACTGGCCATGTTAGACTAAATGATGATAGGCCCCTCCTCAGCTTGAGCATGAGTGACTATTCCGTTGGTCCTTCCAGTTATTCTTTCGGAAATTCAATAAAAGGGGAGAAACCTGGGTTTCAGTCATCAAGTAATAGTTTGGTAGACAATAAGAAGTACTCAGTGCAGGAAAGTCAATCAATAGGAGCTCTTAATGCTGCTATCGGATTACCATTTGAACTGAAACCTCCTCCTGGGAGGGTGGGGACCATCCCTTCTGGAATGCCTCCTTTAAAACCTCCTCCAGGCAGGTTAAGCCCCCTTCCACCTGAGCCGCCTTCATTTAGGCCTACTGGTAATActgctccggctgctactactgccgttgttgctgctgctgcagctcctcatcctcctccttcccctcAGCGGCCTGCTATTAGTAGCACTCCACCACCACCTCGAGCACCAGCTGCTGCCAAACCTGGCCCCCCTCCACCGCCGCCAGCACCAGCTTCTACCAGACCTGGTCCTCCTCCCCCCCCGCCACCAGCACCAGCTTCTACCAGACCTGGTCCTCCTCCACCACCGCCACCAGCACCAGCTTCTACCAGACCTGGTCCTCCTCCACCACCGCCACCAGCACCAGCTTCTACCAGACCTGGTCCTCCTCCACCACCTCCAGCACCAGCTGGTGCCAAACACGGTCCTCCTCCACCACCACTCCCAGCACCAGCTGGTGCCAAACCTGGTCCTCGTCCACCACCACCTCCTATGGGTGGCATACCTCCTCCTCGAGCTCCTCCACCTTTTGGCTCCAAGATGGCTCGGCCTTTAGCTAGTGGATCAGTAGCTGCAGTTGAAGCTGGTGTAGGTGAAGCTGATGCACCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACACTTTTTGGCTATAATGCTGTGGATAAGAACAATGGTCAAAGACAGAAAGAATCTTCCTCCCAAGACCCTTCACCTCAGTTTATCCAGGTTATTGATAAAAAGAAAGCACAAAATTTATTGATTCTGTTGCGAGCATTGAACATGACAAGGGAAGAAGTTTGTGATGCACTTTATGAAGGACATGAACTGCCCTCAGAATTCCTTCAAACCTTGCTGAAGATGGCACCGACATCAGATGAAGAACTTAAGCTTAGACTTTTTAGTGGTGATCTATCTCAACTTGGTCCTGCTGACCAGTTCCTGAAGGCCATGGTTGACATTCCATTTGCATTTAAGCGAATGGAAGCTCTGCTTTTCATGGGCACATTTAAAGAGGAGCTTGCAACTACTATGGAGTCTTTTGCCATTTTAGAGGTTGCTTGTAAGGAGCTAAGAAGCAGCCGGCTGTTTCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGAATGAACGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTCTCAAACTATCTGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACACTTTGTTGTTCTAGAGATTATCCGCTCTGAGGGCGCAAAAGCCGTCCGAAAGGCAAAATCAGATGATCTTCACGATAGTACTCAAGAAACAGAAGATCGCTTCCATGAAATCGGTCTTCAAGTGGTTTCACGCCTGAGCAGTGAACTTGAGAATGTAAAAAAAGCAGCAGTTATAGATGCTGACAGCTTAACAGGAACCACTGCTAAACTTGGCCATGGTCTCGTTAAGATACGAGATTTGGTAAACAAAACCATGAAGAATGTGGAGGAAGATAGGGGGTTTTGTGAGACAGTGAAAAGTTTTGTGCAGGATGCTGAGGCTGATGTTATGAAACTACTGGAAGAGGAGAAGAAGATCACGGCATTGGTGAAGAGCACTGGTGATTACTATTATGGGAATACTGGGAAGGATGAAGGCATACGGTTGTTCGTGGTAGTGCGAGACTTCTTAGTGATGGTGGATAAGGTATGCAAGGAGGTGAGAGATACACAGAAGAAAGCAGCAAAAACTCAAAAACAAGAGACCCCTCGAGGGGCATCTTCCTCAGAAACGCGTCCACCACCTGATTTTCGTCAACGGCTTTTTCCGGCGATTGCTGAAAGGAGGATTGGTGACTTAAGTTCAGATGATGAGAGTCCATAG 3078 0.448 MGVHKHMVNTKISFGVLLVLLLVAAVSSIEKRETEDDFVSELLDPASELLDEHTAKVLWKYCGEGLFHLTKDFEDHLCLSHELSGLSNKISSEIRLLAGEDIQKFINAYCPQFKENFLYCLRKNNLPLPVSGKEDDFKIWHVSYMGPLFSRSSVPETNFARVLLQHISEPPSSGPAVGSPTPSLTPSPEPSLAPSSEPSLAPSPLAPTPLVPRPLQPSFPPSSFFPKLTPPSSTSDISAPPLSDVSNQEDGHSNKKKVVLAVVITALVTFIAAALLFLCCSRYRKTGHVRLNDDRPLLSLSMSDYSVGPSSYSFGNSIKGEKPGFQSSSNSLVDNKKYSVQESQSIGALNAAIGLPFELKPPPGRVGTIPSGMPPLKPPPGRLSPLPPEPPSFRPTGNTAPAATTAVVAAAAAPHPPPSPQRPAISSTPPPPRAPAAAKPGPPPPPPAPASTRPGPPPPPPPAPASTRPGPPPPPPPAPASTRPGPPPPPPPAPASTRPGPPPPPPAPAGAKHGPPPPPLPAPAGAKPGPRPPPPPMGGIPPPRAPPPFGSKMARPLASGSVAAVEAGVGEADAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESSSQDPSPQFIQVIDKKKAQNLLILLRALNMTREEVCDALYEGHELPSEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADQFLKAMVDIPFAFKRMEALLFMGTFKEELATTMESFAILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGAKAVRKAKSDDLHDSTQETEDRFHEIGLQVVSRLSSELENVKKAAVIDADSLTGTTAKLGHGLVKIRDLVNKTMKNVEEDRGFCETVKSFVQDAEADVMKLLEEEKKITALVKSTGDYYYGNTGKDEGIRLFVVVRDFLVMVDKVCKEVRDTQKKAAKTQKQETPRGASSSETRPPPDFRQRLFPAIAERRIGDLSSDDESP 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01279 1025 MobiDBLite consensus disorder prediction 175 227 - -
Cca04g01279 1025 SUPERFAMILY Formin homology 2 domain (FH2 domain) 639 992 - -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 170 251 - -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 228 248 - -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 363 555 - -
Cca04g01279 1025 Gene3D Formin, FH2 domain 574 997 IPR042201 -
Cca04g01279 1025 PANTHER FORMIN-RELATED 475 1023 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca04g01279 1025 PANTHER FORMIN-RELATED 1 477 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca04g01279 1025 SMART it6_source 569 980 IPR015425 -
Cca04g01279 1025 ProSiteProfiles Formin homology-2 (FH2) domain profile. 569 991 IPR015425 -
Cca04g01279 1025 PANTHER FORMIN-LIKE PROTEIN 1 477 - -
Cca04g01279 1025 PANTHER FORMIN-LIKE PROTEIN 475 1023 - -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 413 550 - -
Cca04g01279 1025 Pfam Formin Homology 2 Domain 571 965 IPR015425 -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 974 1006 - -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 985 999 - -
Cca04g01279 1025 MobiDBLite consensus disorder prediction 367 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01279 Cca-Chr4 15732470 15740269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01279 12 393 FH2 protein (formin) Gene Family AT5G54650 29.250 6.82e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01279 04 15732470 15740269 Cca04g01279 04 15732470 15740269 ECH
Cca10g00994 10 11669961 11676230 Cca04g01279 04 15732470 15740269 PCT