Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01276 ATGGTGGGGACTCCAATTAATGGAAGAACAAGGCAAGCTTTCACTGTTGTCAATGGTGGTGGCCACGATCTTGGTCCCAGCAGTGCTCCTCCGAGCAATGCTGGATCGGACTATGGTGTCATAGAGTTCACAAGAGAGGATGTGGAAGCATTGCTAAATGAGAAGGCCAAGAGAAAAGACAGATTTAATTATAAGGAAAGATGTGAAAATATGATGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATATTTCCAAGACCTTGAGATGTACTACTCTCTAGAGCAGGAGAAGTTAAAGAATTCACTGGAATTGACTCAGCAAAAATGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAAGAATTAAATTCAATCATTACGGAAATGAGAAGGAATTGCACTTCTTTACAAGAAAAATTGATAAAGGAAGAATCGGAAAAGTCGGTTGCAGTGGAATCACTTGTTAAAGAGAGAGAGGCTAGGCTTGACATTGAGAGGTCACAGAGTACTCTATCAGAGGACCTTGGAAGAGCCCAACGAGAGATCCAAAGTGCAAATCAGAAGATAGCATCACTCAACGACATGTATAAGCGGTTACAGGATTACATAACAAGCTTACAACAGTACAATGGAAAACTTCATTCTGAACTTTCATCAGTTGAAGATGAACTTAAACGTGTAGAGAAAGAGAAGGTTACTGTAGTGGAAAACATCACCATGTTAAGGGGTCAACTTACTTTATCCGTTTCTTCTCAAGAAGAGGCCATAAAACAGAAGGATGCCCTTGCTACAGAAGTTGCTTCTCTTAGAGGAGAGTTGCAACAAGTAAGAGATGAGCGAGACCGGCAATTATCACAAGTACAAACTTTATCTTCTGAATTAGAGAAATTTAAAGAATCTACAAAACAATCCTCCACTGAATTGGACAGCTTGACAATAAAAGCAATTGACCTGGAGGCAAAATGTTCTTTGAAAGATAATCAAATAAAGGCATTGGAAGAGAAGCTAGCAAATGCAGAGAAGAAATTGCAGGTGTCTGATATATCTGTATATGAGACAAGGACAGAATTTGTAGGACAACAGAAAATGGTGAATGAGTTACAAAGACGCTTGGCAGATGCAGAATATAAACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACACAATACCATTTTGGAGTTAAAAGGGAACATTCGTGTATTCTGTCGAGTGAGGCCTTTATTACCTGATGAAAGTTGTAGCTCAGAAGGCAAGATTTTCAGTTATCCAGCATCAATGGAAACTTCTGGACGAGCCATTGACCTAGCCCAAAATGGCCAAAAACTTCCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTAGAAATTTCACAGCTTGTACAAAGCGCTCTTGATGGTTATAAGGTTTGCATCTTTGCCTATGGTCAAACAGGGTCAGGGAAAACCTATACCATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCATTAGAACAAATATTTCAAGCAAAGCAGTCTCAGCAACCACAAGGATGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAAACGATTCGAGATCTGATATCTACAAACAGATCATCATCTGATGCGACACGCTCGGAAAATGGTACTCCTGGAAAACAATATACAATCAAACATGATACAAACGGAAATACACATGTTTCTGATCTTACAGTTGTGGATGTTCAGAGTGCTAAAGAAGTTGCATTTCTTTTGAATCAAGCTGCAAATAGCAGATCCGTGGGAAAAACTCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATATGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAACCTCATTGATCTTGCTGGTAGCGAGCGTCTTTCAAAGAGTGGATCAACTGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCATTGAGTGATGTTATATTTGCCTTAGCCAAGAAGGAGGACCATGTGCCATTCAGAAACTCAAAGCTTACATATCTGCTTCAGCCTTGTCTAGGTGGAGACTCCAAGACACTAATGTTTGTGAACATATCACCTGATCCTTCTTCAGTTGGTGAGTCACTATGCTCACTCAGGTTTGCATCAAGAGTCAATGCTTGTGAGATTGGAACACCGCGGCGTCAAACCAATGGACGTTCTACAGAGTCTCGCTTGAGCTATTTCTAA 2286 0.3968 MVGTPINGRTRQAFTVVNGGGHDLGPSSAPPSNAGSDYGVIEFTREDVEALLNEKAKRKDRFNYKERCENMMDYIKRLKVCIRYFQDLEMYYSLEQEKLKNSLELTQQKCIEIELLLKIKEEELNSIITEMRRNCTSLQEKLIKEESEKSVAVESLVKEREARLDIERSQSTLSEDLGRAQREIQSANQKIASLNDMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKVTVVENITMLRGQLTLSVSSQEEAIKQKDALATEVASLRGELQQVRDERDRQLSQVQTLSSELEKFKESTKQSSTELDSLTIKAIDLEAKCSLKDNQIKALEEKLANAEKKLQVSDISVYETRTEFVGQQKMVNELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLPDESCSSEGKIFSYPASMETSGRAIDLAQNGQKLPFTFDKVFTPEASQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQAKQSQQPQGWKYEMQVSMLEIYNETIRDLISTNRSSSDATRSENGTPGKQYTIKHDTNGNTHVSDLTVVDVQSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSVGESLCSLRFASRVNACEIGTPRRQTNGRSTESRLSYF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01276 761 Coils Coil 317 351 - -
Cca04g01276 761 Coils Coil 121 148 - -
Cca04g01276 761 Coils Coil 41 61 - -
Cca04g01276 761 Gene3D Kinesin motor domain 344 742 IPR036961 -
Cca04g01276 761 PANTHER KINESIN-LIKE PROTEIN 7 760 - -
Cca04g01276 761 PANTHER KINESIN-LIKE PROTEIN KLP-3 7 760 - -
Cca04g01276 761 Coils Coil 366 386 - -
Cca04g01276 761 PRINTS Kinesin heavy chain signature 476 497 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 PRINTS Kinesin heavy chain signature 610 627 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 PRINTS Kinesin heavy chain signature 641 659 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 PRINTS Kinesin heavy chain signature 690 711 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 Coils Coil 261 295 - -
Cca04g01276 761 SMART kinesin_4 398 748 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 738 IPR027417 -
Cca04g01276 761 Coils Coil 170 204 - -
Cca04g01276 761 Pfam Kinesin motor domain 406 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 MobiDBLite consensus disorder prediction 550 576 - -
Cca04g01276 761 ProSiteProfiles Kinesin motor domain profile. 400 740 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca04g01276 761 ProSitePatterns Kinesin motor domain signature. 640 651 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca04g01276 761 Coils Coil 212 239 - -
Cca04g01276 761 CDD KISc_C_terminal 398 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01276 Cca-Chr4 15691058 15698077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01276 372 752 Calmodulin-binding Proteins AT5G65930 38.583 1.26e-77 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01276 K10405 - gmx:100788335 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01276 04 15691058 15698077 Cca04g01276 04 15691058 15698077 ECH
Cca10g00992 10 11651698 11658445 Cca04g01276 04 15691058 15698077 PCT