Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01274 ATGGTTTCCCGGGAAAACACCAATTGGTTCTTCGATTACGCCTTGATTGACGATATTCCCGTTCCCGACGCCGCTTTCTCCGCCTTCACCTGGCCCCCCAACGCCTCCAATGTCGGTGTTGAAATTGATGGCTCATTGGGGGATTCTGACGGTCTCAAAGAGTCCGGTTCAAAGAAGAGGGTTAGGTCTGAGTCATGTGCTGCTTCTAGCTCTAAGGCATGTCGTGAGAAGTTGCGAAGAGATAGGCTTAACGACAAGTTTGTTGAATTGGGTGCCATTTTGGAGCCTGGAAGGCCTATCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAGTTACGGGGTGAAGCCCAAAAGTTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTGAAGGCTGAGAAAAATGAACTTAGAGATGAGAAACAGAGGCTCAAGGCAGAAAAAGAGAAGTTGGAGCAGCAACTGAAATCATTAAATGCCCAACCTAGTTTCATGCCTCCCCCTGCTGCAATCCCGGCCGCAGCATTTGCGGCACAAGGCCAAGCCCACGGCAACAAGCTGGTTCCTTTTATCAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCTCCTGCTGCAGTGGATACCTCACAGGATCACGTTCTCCGTCCACCAGTTGCCTAA 690 0.4899 MVSRENTNWFFDYALIDDIPVPDAAFSAFTWPPNASNVGVEIDGSLGDSDGLKESGSKKRVRSESCAASSSKACREKLRRDRLNDKFVELGAILEPGRPIKTDKAAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01274 229 Gene3D - 56 116 IPR036638 GO:0046983
Cca04g01274 229 CDD bHLH_AtILR3_like 72 147 - -
Cca04g01274 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 137 IPR036638 GO:0046983
Cca04g01274 229 Coils Coil 115 170 - -
Cca04g01274 229 Gene3D arf6 gtpase in complex with a specific effector, jip4 117 171 - -
Cca04g01274 229 PANTHER BHLH TRANSCRIPTION FACTOR 1 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca04g01274 229 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Cca04g01274 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Cca04g01274 229 SMART finulus 73 124 IPR011598 GO:0046983
Cca04g01274 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01274 Cca-Chr4 15662522 15666439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01274 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.763 1.25e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g01274 HLH 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01274 - - gmx:100788858 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01274 04 15662522 15666439 Cca04g01274 04 15662522 15666439 ECH
Cca10g00989 10 11622136 11624611 Cca04g01274 04 15662522 15666439 PCT