Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01266 ATGGGGAACAATAGTTTGTTTCGTTATGCAGATGGGTTGGACAAGTTGTTGATGTTCTTTGGGACCTTGGGGAGCCTTGGAGATGGGCTACAAACCCCTCTCACGATGTACATTCTCAGTGATGTGATCAACGCCTATGGAGACAAAAGTAGTAATAGTTTGACAAAGCATGATGTGAACAAGTATGCGTTGAGGCTTTTTTGTGCTGCAATTGGAGTTGGACTTTCAGCTTTTGTTGAAGGAATATGTTGGACAAGAACTGCTGAGAGACAAGCTTCAAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGAAGTTGGTTTCTTTGACACCCAAACTTCTGGTTCTTCAACAACCTACCAAGTTGTCTCTCTCATTTCCTCAGATTCAAATACAATCCAAGTTGTCTTGTGTGAGAAGATACCTGACTGTCTCGCTTACTTGTCAACATTTCTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACATTGGCAGCCATACCACTCTCTATCATGTTCATTGTTCCAGCACTAGTATTTGGAAAGATCATGCTGGATCTTGCAATGAAAATGATTGAGTCTTATGGAGTTGCTGGTGGGATAGCAGAACAAGCAATATCTTCAATAAGAACTGTTTACTCATATGTTGGGGAGAATCAAACACTAAACAGTTTTAGCAGTGCACTTCAGAAAACTATGGAATTTGGAATAAAGCAAGGTTTTGCCAAGGGGCTGATGTTGGGAAGTATGGGAGTTATTTACATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACATATTTGATCACTAACAAAGGTGAACAAGGTGGCCATGTATTTGTAGCTGGCTTCAATGTCCTCATGGGAGGCTTGAGCATTTTAAGTGCACTTCCAAATTTAACTGCCATGACAGAAGCCACTGCAGCTGTCACTCGCCTTCTTGAAATGATTGACCGGGTGCCAACTATAGATTCCGAAGATAAGAAAGGAAAGGCCTTATCATATGTGAGAGGAGAAATTGAATTTCGAGACATCTACTTCTGTTACCCTTCTAGGCCAGACACACCAATTTTGCAAGGATTCAATCTCACTGTCCCAGCAGGCAAGAAGGTAGGCCTTGTGGGAGGTAGTGGTTCAGGTAAATCCACTGTCATAGCACTGCTTGAAAGGTTTTATGACCCTGTTGAGGGAGAAATACACTTGGATGGTCACAAGATTAATCGGCTTCAGTTGAAGTGGTTGAGATCTCAACTTGGCCTAGTAAATCAAGAGCCTGTTCTCTTTGCCACATCCATAAAAGAGAATATACTGTTTGGAAAAGAAGGGGCCTCAATGGAGAGTGTGATAACTGTGGCTAAAACAGCTAATGCCCATGATTTCATTGTCAAGTTGCCAGATGGATATGAAACTCAAGTTGGCCAGTTTGGATTCCAATTGTCAGGCGGCCAGAAGCAACGCATTGCCATAGCAAGAGCCTTACTAAGGGATCCAAAGGTTCTCTTGCTTGATGAAGCTACCAGTGCACTTGATGCTCAATCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAGGGAAGGACAACCATCATCATTGCTCACCGCTTGTCCACAATTCGAACCGCTCAGTTGATTGCAGTCCTTCAAGCAGGGAGAGTGGTTGAAACAGGTACTCACAATGAGCTCATGGAGTTGAATGATGGAGAGTATGCTCGAATGGTTGAGTTGCAGCAAGTGACAACTCAGAATGATGAGTCCAAGTCTTCCAATCTTCAAATAGAAGCAAAGAGCTCCCACAGAATGAGCATTCCCCAAAGTCCAGGTGTGAGTTTCAGATCAAGCACTGTAGGCACACCAATGTTGTACCCTTTCAGTCAGGGATTTTCCATGGGAACACCATACTCCTACTCTATCCAGTATGACCCTGATGATGATAGTTTTGAAGATAACTTGAAAAGGCCAAATCATCCGGCTCCTTCACAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGAAGAACAGTGCTAGGAATCTTGGGAGCAATAGGGTCAGGAGCAGTACAACCTGTAAATGCATATTGTGTAGGAACACTTATATCAGTTTATTTTGAACCTGAAAGTTCTAAGATGAAGTCTAAAACTAAAACCCTGGCTCTCGAATTCTTAGGAATTGGTGTTTTCAACTTCTTCACTAGTATTCTCCAACACTATAACTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGAGAGAAGATACTAGAGAAGTTGATGTCTTTTGAGATAGGGTGGTTTGATCATGAAGACAACACAAGTGCATCCATTTGTGCAAGATTATCCTCTGAAGCCAACTTGGTTCGTTCCCTTGTCGGGGATCGGATGTCTTTGTTGGCCCAAGCAGTTTTTGGGTCAGTCTTTGCCTACACTCTAGGGCTTGTGCTCACGTGGAAGCTTTCTCTTGTGATGATAGCAGTGCAGCCATTAGTCATTGGAAGCTTTTACGCAAGAAGTGTCTTGATGAAGAGTATGGCAGAGAAAGCTCGCAAAGCACAAAGGGAGGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCATAGAACCATAACTGCCTTCAGCTCTCAGAAAAGAATGTTGGCACTTTTCAAATCCACATTGGTGGGGCCTAAAAAGGAGAGTATTAGGCAATCTTGGATTTCAGGCTTTGGTCTTTTCAGCTCCCAGTTTTTTAACACTTCATCAACAGCATTGGCTTATTGGTATGGTGGGAGGCTCCTGATAGAGAATAACATAGAACCAAAGCACCTCTTCCAAGCATTTTTAATTCTACTCTTCACTGCATACATTATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAGGGAAGCAGTGCAGTTGGATCAGTTTTCGCAATCATAGACAGGAAAACTGAGATTGATCCTGATACCTCATGGGGTGGTGAGAAAAAGAGGAAAATAAGGGGCAGAGTGGAGCTTAAGAGTGTTTTCTTTGCATATCCAAGTAGACCTGATCAAATGATTTTCAAGGGTCTGTGTCTTAAAGTAGAAGCTGGGAAAACAGTGGCTCTAGTGGGGCACAGTGGTTGTGGTAAATCAACTGTTATTGGCCTTATTGAAAGGTTTTATGATCCTGCAAAGGGAACAGTGTGCATAGATGAACAAGACATAAAGTCCTATAATTTGAGAATGCTGAGGTCGCAAATTGCATTAGTGAGTCAAGAGCCAACCCTTTTTGCTGGCACCATTCGAGAAAATATTGCCTATGGGAAAGAAAACACAACTGAATCTGAGATAAGAAGGGCAGCATCTCTGGCCAATGCACATGAATTCATAAGTGGAATGAATGATGGATATGAGACATTCTGTGGAGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAACAAAGAATAGCCTTAGCTAGGGCAATACTGAAGAACCCTGCAATACTGCTTCTGGATGAGGCTACTAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTAGAGAAGATAATGGTTGGAAGAGCATGCATAGTAGTGGCACACAGGCTATCTACAATACAAAAATCCAACTCCATTGCTGTGATTAAGAATGGGAAGGTTGTAGAACAAGGTTCACATAACGAATTGATTTCACTTGGAAGTGAGGGTGCATACTATTCTCTTGTTAAACTTCAAGGTGGTAGCTCCCCTAGGTAA 3750 0.4243 MGNNSLFRYADGLDKLLMFFGTLGSLGDGLQTPLTMYILSDVINAYGDKSSNSLTKHDVNKYALRLFCAAIGVGLSAFVEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTSGSSTTYQVVSLISSDSNTIQVVLCEKIPDCLAYLSTFLFCHIFAFVLSWRLTLAAIPLSIMFIVPALVFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNSFSSALQKTMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTYLITNKGEQGGHVFVAGFNVLMGGLSILSALPNLTAMTEATAAVTRLLEMIDRVPTIDSEDKKGKALSYVRGEIEFRDIYFCYPSRPDTPILQGFNLTVPAGKKVGLVGGSGSGKSTVIALLERFYDPVEGEIHLDGHKINRLQLKWLRSQLGLVNQEPVLFATSIKENILFGKEGASMESVITVAKTANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTAQLIAVLQAGRVVETGTHNELMELNDGEYARMVELQQVTTQNDESKSSNLQIEAKSSHRMSIPQSPGVSFRSSTVGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNLKRPNHPAPSQWRLLKMNAPEWGRTVLGILGAIGSGAVQPVNAYCVGTLISVYFEPESSKMKSKTKTLALEFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMSFEIGWFDHEDNTSASICARLSSEANLVRSLVGDRMSLLAQAVFGSVFAYTLGLVLTWKLSLVMIAVQPLVIGSFYARSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTLVGPKKESIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIENNIEPKHLFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFAIIDRKTEIDPDTSWGGEKKRKIRGRVELKSVFFAYPSRPDQMIFKGLCLKVEAGKTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSYNLRMLRSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETFCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRACIVVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGSEGAYYSLVKLQGGSSPR 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01266 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca04g01266 1249 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524
Cca04g01266 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 317 - -
Cca04g01266 1249 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1244 - -
Cca04g01266 1249 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Cca04g01266 1249 Pfam ABC transporter 1023 1171 IPR003439 GO:0005524
Cca04g01266 1249 Gene3D ABC transporter type 1, transmembrane domain 78 910 IPR036640 GO:0005524|GO:0016021
Cca04g01266 1249 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524
Cca04g01266 1249 SMART AAA_5 1031 1203 IPR003593 -
Cca04g01266 1249 SMART AAA_5 371 563 IPR003593 -
Cca04g01266 1249 Gene3D - 994 1247 IPR027417 -
Cca04g01266 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 583 IPR027417 -
Cca04g01266 1249 Gene3D - 342 595 IPR027417 -
Cca04g01266 1249 Pfam ABC transporter transmembrane region 681 953 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca04g01266 1249 Pfam ABC transporter transmembrane region 18 294 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca04g01266 1249 SUPERFAMILY ABC transporter transmembrane region 667 987 IPR036640 GO:0005524|GO:0016021
Cca04g01266 1249 CDD ABC_MTABC3_MDL1_MDL2 1004 1243 - -
Cca04g01266 1249 MobiDBLite consensus disorder prediction 586 615 - -
Cca04g01266 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca04g01266 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Cca04g01266 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Cca04g01266 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1243 IPR027417 -
Cca04g01266 1249 CDD ABC_MTABC3_MDL1_MDL2 344 582 - -
Cca04g01266 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1240 IPR003439 GO:0005524
Cca04g01266 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1244 IPR039421 -
Cca04g01266 1249 SUPERFAMILY ABC transporter transmembrane region 6 328 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01266 Cca-Chr4 15378870 15386593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01266 4 585 Calmodulin-binding Proteins AT2G36910 35.893 3.65e-100 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01266 K05658 - gmx:100789562 2291.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01266 04 15378870 15386593 Cca04g01266 04 15378870 15386593 ECH