Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01263 ATGTCTGAATTAGACGCTCAGATTCCTACTGCCTTTGATCCTTTTGCTGAGGCAAATGCTGATGATTCGGGTGCTGGGACAAAGGAGTATGTGCATATTCGCGTACAGCAGCGAAATGGTAGAAAAAGTCTGACAACTGTTCAGGGATTGAAAAAAGAATTCAGCTATAACAAGATACTTAAAGACGTTAAGAAAGAGTTCTGCTGCAATGGCACCGTTGTTCAGGACCCAGAACTAGGACAGGTTATTCAACTTCAAGGTGATCAGCGGAAAAATGTTTCTACGTTCCTGGTCCAGGCTGGTATCGTGAAGAAGGAGCATATCAAGATTCATGGTTTCTAA 342 0.4269 MSELDAQIPTAFDPFAEANADDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01263 113 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g01263 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Cca04g01263 113 Gene3D - 2 113 - -
Cca04g01263 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Cca04g01263 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Cca04g01263 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Cca04g01263 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Cca04g01263 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Cca04g01263 113 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG ISOFORM X1 1 113 - -
Cca04g01263 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01263 Cca-Chr4 15341657 15344313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01263 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 90.265 1.38e-75 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01263 K03113 - qsu:111988426 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01263 04 15341657 15344313 Cca04g01263 04 15341657 15344313 ECH