Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01249 ATGACTTCAGTCAAGATAGCTTTTGTAGCTGTCCTTCTTACTATAATGGCTTGCAGTGGACTTGGTTTTCAGGGGATACCAAGAATGCCAAACCTTAAGCAATGTGAAGAACATGATGAATGCAACTTGATATCGGCTAGTTGTGAAGGAATACCAATTTGTTATGAGGGTGGTTGCATGTGTTTCCAAAACAAAGGAATTGCAGTACGAAATTGTGAAGTAAACAGTCAATATTGCATGTTTTGTTCGGAGCAATTCATTGGTGGTCATAAGTATTGCAACTCTGATAACATGATTGTGCTTTGGGTGGCAATCCCCTCCTTGTTGGAGAAAGGTTCAGTTATGTTGGTGATGACAGTGTTCTTAATTATATTTCTCTTCCAATACCTTCCCAAAATTTTTCATTCTGTGTGCCATCTTCGACGGACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTATGGTGGGGAATCGCCCTTAACATGATCGCATATTTTGTTGCTTCCCATGTAAGTGATCACACCTTGCTTTTCACTCTTAGTTTTTAA 549 0.3953 MTSVKIAFVAVLLTIMACSGLGFQGIPRMPNLKQCEEHDECNLISASCEGIPICYEGGCMCFQNKGIAVRNCEVNSQYCMFCSEQFIGGHKYCNSDNMIVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHVSDHTLLFTLSF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01249 182 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 99 173 - -
Cca04g01249 182 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cca04g01249 182 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 99 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01249 Cca-Chr4 15158677 15163357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01249 99 172 Ion Channels AT5G54250 74.324 1.39e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01249 K05391 - gmx:100796761 148.288