Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01247 ATGGCTACTACCATAACAGAGGAAGACTTCTCCTCATCACGTGCCTCCCACGTGCTTGATTCCACCTCggatgaggaggaggaggaggaggatggagaggaagaggaggagaacgagaacggctccggcggcggggggtggttgatgggggcggcgtgcggtggcggaggaggggggcggaggagggagggagggTTGCTGGGGAGGGTGGTGGACCCTCGGTCGAAGTGGGTCCAGGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCCGCGGGGCTGTTCGTGGACCCTCTGTTCTTCTACGCGCTCTCCGTTAGCGACTCCTGCATGTGCCTCTTCGTCGACGGCTGGCTCGCCGTTACCGTCACGGCGCTCAGGTGCATGACGGACGCGCTGCACCTCTGGAATATGCTCCTCCGAATCAAGATGGCCAAGCGCACCTTCGGCCTCGGCGCCGCCGGTGCCTCCTCCGCCGGCCTCCGAGACACCAGGCCGCGCTCCGTCGCGCTTGGCTATCTTAAGTCGCGGACCGGATTCTTCTTTGACTTGTTCGTTATTCTCCCTCTTCCACAGATTGTGCTTTGGGTGGCAATCCCCTCCTTGTTGGAGAAAGGTTCAGTTATGTTGGTGATGACAGTGTTCTTAATTATATTTCTCTTCCAATACCTTCCCAAAATTTTTCATTCTGTGTGCCATCTTCGACGGACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTATGGTGGGGAATCGCCCTTAACATGATCGCATATTTTGTTGCTTCCCATGCAGCAGGTGCATGTTGGTACTTGCTGGGGATCCAAAGGGCAGGGCAGTGTCTGAAAGAAGAGTGTGGGAAAACAAGTGGTTGTGGCATGAAGATTCTGTCTTGTCAAACACCTATATACTATGGAAGCAATAGTTTGTTAGTTAGGGATAAAGCAAGATTGGCTTGGGCAGAGAACAGGAACGTGAGGCTCACGTGCTTAAATGGTCCTGACAACTACAACTATGGAGCTTATAAATGGACGGTTCAGCTTGTCACTAATGATAATCGATTGGAGAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTTAGCACTTTCGGGAACCTAGAGAGTACAACTGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTCGTCACTATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACGACCTCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGGCGTTTGCCGCAAGGGTTTCGGCAGCGAGTGCGTAACTATGAGAGGCAGCGTTGGGCTGCAATGCGTGGAGTTGATGAATGCGAGATGACCAGAAATCTCCCTGAAGGATTGAGAAGAGACATTAAGTACCATCTTTGTTTAGACTTGGTGAGACAGGTGCCACTATTCCAACACATGGATGAACTGGTTCTAGAGAACATATGTGATCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACGATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTAGTAAGGGGTCACCTTCAAAGCAGTCAAGTCCTAAGGGACGGTGTGAAGAGTTGCTGCATGTTAGGTCCAGGAAACTTCAGTGGGGACGAACTCCTCTCATGGTGTCTAAGAAGACCATTCATAGAGCGTCTTCCACCGTCTTCATCCACACTCATCACGTTGGAAACCACAGAGGCATTTGGCCTTGAAGCCGAGGACGTGAAATATGTGACACAACATTTCAGGTACACGTTCGTGAAGGAAAAGGTCAAGAGAAGTGCAAGGTATTATTCTCCGGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCATGGAGGAGGTACAAGCACAGGTTGACTTTGACTTCCTTGTCCTTCATAAGGCCTAGGAGGCCCTTGTCGCGGTCCTCTTCCTTGGGAGAGGATAGGTTAAGACTCTACACAGCGTTGTTGACCTCACCAAAGCCTAATCAAGATGATTTTGACTTTTGA 2055 0.4618 MATTITEEDFSSSRASHVLDSTSDEEEEEEDGEEEEENENGSGGGGWLMGAACGGGGGGRRREGGLLGRVVDPRSKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCLFVDGWLAVTVTALRCMTDALHLWNMLLRIKMAKRTFGLGAAGASSAGLRDTRPRSVALGYLKSRTGFFFDLFVILPLPQIVLWVAIPSLLEKGSVMLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAGQCLKEECGKTSGCGMKILSCQTPIYYGSNSLLVRDKARLAWAENRNVRLTCLNGPDNYNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSLGEDRLRLYTALLTSPKPNQDDFDF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01247 684 CDD CAP_ED 487 593 IPR000595 -
Cca04g01247 684 SUPERFAMILY cAMP-binding domain-like 413 601 IPR018490 -
Cca04g01247 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 21 681 - -
Cca04g01247 684 MobiDBLite consensus disorder prediction 22 40 - -
Cca04g01247 684 Gene3D Jelly Rolls 485 603 IPR014710 -
Cca04g01247 684 MobiDBLite consensus disorder prediction 1 18 - -
Cca04g01247 684 Coils Coil 19 39 - -
Cca04g01247 684 MobiDBLite consensus disorder prediction 1 46 - -
Cca04g01247 684 ProSiteProfiles cAMP/cGMP binding motif profile. 487 597 IPR000595 -
Cca04g01247 684 Pfam Cyclic nucleotide-binding domain 508 595 IPR000595 -
Cca04g01247 684 Gene3D Helix hairpin bin 412 478 - -
Cca04g01247 684 SUPERFAMILY Voltage-gated potassium channels 72 408 - -
Cca04g01247 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 21 681 - -
Cca04g01247 684 Pfam Ion transport protein 81 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01247 Cca-Chr4 15116035 15127179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01247 49 683 Ion Channels AT5G54250 78.247 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01247 K05391 - gmx:100796761 1187.94