Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01239 atggcttgcataaccaacaataacggttcttcatcacgcacaatgaattttgatgtttttgtgagctttagaggtgaggatactcgtaataatttcactgatcatctttttgctgctcttcgaaggaaaggtgttgttgccttcagagataaccaaaatatcaataaagggcaactcttggaacctgagctcatgcaagcaatcaaacgatcacgtcttttcattgttgtcttctcaaagaattatgcatcatcctcatggtgcttgaaagagttgacaatgatttttgattgggttaaagaaacaggtcaaagtgttcttcctattttctatgatgtcactccttctgaagttcgaaaacaaagtggagagtttcaaaaagcttttgccgaatacgaagaaagctttagagatgatttggaaatggtaaaaaaattgagggaagctatgaaggcaattgccaaccgttgtgggtgggatgtactgaataagctacaacatgaagaaatagaaaaagttgttgaagaggtaatcaacttattgggtcataatcaaattttgaattttggagatgatttagttgacatgcactctcgtgtaaaacaattagaggaacttgttgatccagatgcaaatgaagttgttcgagtaataggaataagtgggatgggtggaataggaaagacaacactcgctactgctttatttgataaaatctctcatcaatatgatgcttgttgtttcattgatgatgtaagcaaaatttatggggagtttggacccgtcgttgcacaaaaacaacttctttgtcaagctctaaatcaaggtaatgttgagataaacaatctttaccaaggaaccttgttgataagaactaggttgtgccacttaaaggtgcttattgttctagataatgttgatcaagatgaacaattggaaaaattggctttgcatcctaaatatctaggtgtagggagtagaatcctcataatctctagagatagtcatatcttaagaaattatggagtgaatgaagtttacaatgttcaattgttgaatgcaaataaagctcttcaattattttgtagaaaaactttcaaatctgatgatattttgaatgattatgaagagttgacctatgatgtactaaaatatgttgatggccttcctttagcaattaaagtgttaggctcatttttgtttggtcgagatgtttatgagtggagaagtgcattggctagactaaaagaatatccaaacaaagatattatggaggtgttgcgaataagttttgatggattgaaggaaatggaaaaagaaatatttttagatattgcttgtttcttttgtgatagacaccaacaacagagtaagggaacaataaaaaggtttctagactatcgtggattttttcccgatattggcatgaaagttctcattgaaaaatcactcataacttgtgataaatggggggttaaaatgcacgacttgttaaaagagttaggcagaagtattgttcgagaaaaatcacccaatgaaccaagaaagtggagcgggttatgggacatcaaagatctccaaaatgtcatgataaaaaatgagcatctgccaaatttgatatatctaaatcttagccactccaaaaatcttattgaggtgccagatttaacgggagttcctcgtcttaggcgtcttattcttcaaggatgtataaatattaggcggatccagccatccattggtattctgagaaaacttgtttctctgaatttggaaaattgtaaaaatcttattgagatgccagacttaacgggagttcctcgtcttaggcgtcttactcttaaaggatgtataaatattacgcggatccacccatccattggtattctgagagaacttttttctctgaatttgaaaaattgtaaaaatcttttccacaatttgaatatcattttcggactcaaatctcttaaggcgctaaatctctctggctgctcaaaattactaaataatcgtctgctaaagaaatcaagggaggcagaacatttggagaacgttgataaaaatacaagtgttatccaattatcaacatcctctgtatatgtaattctaatgttgcctttgtatttcctttcctctcacaaacatggagattcacttgatttattgttgccatatttgtctcgtttcccatgtttgcgatatcttgatctaagtttctgcaatctacttcaaattcccgatggtattgggaccttacagtctttagaaaccttaaatttggggggaaacaaattcgtgagactacctactaccatcaaggagctttccaatcttcagcgtttaaatttgcagcactgcaagcagctgaaatatttgcctgagcttccAACAACCAAAAAAAACAAATCTAGCGCATATTATGGGggtttatatatttttaattgccccaatttgagtgaaatggaacattgttatcatatggttttttcttggatgatacaaatatttaagGCTTTCTTGCAATCCTCCCGTTCCTTGCATAGTCTTCGGATTGTTATTCCTGGAACTCAAATTCCAAGGTGGTTCAGTAAACAAAATGTGGGTGGGTCAATAAGCGTGAACCTGTCTCCTGTTATTATGGAAGACCCAAATTGGATGGGTCTCGCTTGTTGTTCTTTGTTAGTGGCGCATCATGATCCTAATAATTTGAATGATAGATGGCAACATGATAATTTTGGAAGTATTGGATACAATTTTCAAAATATACAAGTTTTGCATAAATCAGATTGGGTACTTCCAATACTTTTAACCAATGATCTGGTCACAGGTGAAATAGATCACTTGTTCATAACGTTTCACTCTCAGGAAACAATCAATGCTTTTCGAAGTCCAGATGAAGACGAAATGCCTGATCTTGATAAAGTGGGATTCACAACAGTCATATTTCACCACCCTAAAGAGATTTCTTTTCAACCACAATTACATCAAAGAAATTCTTTCCCATTAGTGGGCCTGAACTACCAGCTGGTTCAAACTTATTTCACCTATTGGATTGTAGTCAGTTATAGTTGCTCTTCGGGATGGATTCAAAGACTCCACTCTGAGGCATCACTCTCGCGTACACACAAGGCTAGCACTGTCAAACAATTAAAGAAGGGTTTGTCAAATCTGATGGGAGAAGAACTTTGGAACAAGTTGCAGATGAGAGGACTGCTTGAGCCTATTATGGCTCAATTATCTTCAAAGTCAAGGGTTTTGAAAGTACTTAACCTTGAAGGTCCATCGCTAAAACATGCTCCTAGTGATTTAGGAAATCTTTTTCACTTAAGGTTCTACCTACCATGCATGCAAATTGCAAAGGGACGTGACACGATATTTAAAGCAAAGCTATTACCACCTTTGATGGTACCAACTGTTGGGATTCATCCCAAGTCCCACATCGGAGTCCAAAAACAAAACCGTGCGGGCTTGGGCCCAAAGCGGACAATATCATACTATGGTGGAGGAACAGGTGGACTAGCGGGCCCAGCAAGTGGTTCGACTAGGGTTCGATGCGGGAAGACCCTCAGTGTTGTGCCTCGCGATGGAGAAGAGATCCGAACTTGGCGGCGTGTCCCCGTACAGTTAACGGCGATACAAGATGGTGACGGATTATCGCTTGAGGGGAGGAGGAGGTTTGTTGGGATTCATCCCAAGTCCCACATCGGTAAAGCGGACAATATCATACTATGGTGGAGGAACAGGTGGACTAGCCGGCCCAGCACCAACAACGATAGCTCCCACACGCGTAGGGTGACAAATACAATTACCATCATTGTCGCATGA 3828 0.1531 MACITNNNGSSSRTMNFDVFVSFRGEDTRNNFTDHLFAALRRKGVVAFRDNQNINKGQLLEPELMQAIKRSRLFIVVFSKNYASSSWCLKELTMIFDWVKETGQSVLPIFYDVTPSEVRKQSGEFQKAFAEYEESFRDDLEMVKKLREAMKAIANRCGWDVLNKLQHEEIEKVVEEVINLLGHNQILNFGDDLVDMHSRVKQLEELVDPDANEVVRVIGISGMGGIGKTTLATALFDKISHQYDACCFIDDVSKIYGEFGPVVAQKQLLCQALNQGNVEINNLYQGTLLIRTRLCHLKVLIVLDNVDQDEQLEKLALHPKYLGVGSRILIISRDSHILRNYGVNEVYNVQLLNANKALQLFCRKTFKSDDILNDYEELTYDVLKYVDGLPLAIKVLGSFLFGRDVYEWRSALARLKEYPNKDIMEVLRISFDGLKEMEKEIFLDIACFFCDRHQQQSKGTIKRFLDYRGFFPDIGMKVLIEKSLITCDKWGVKMHDLLKELGRSIVREKSPNEPRKWSGLWDIKDLQNVMIKNEHLPNLIYLNLSHSKNLIEVPDLTGVPRLRRLILQGCINIRRIQPSIGILRKLVSLNLENCKNLIEMPDLTGVPRLRRLTLKGCINITRIHPSIGILRELFSLNLKNCKNLFHNLNIIFGLKSLKALNLSGCSKLLNNRLLKKSREAEHLENVDKNTSVIQLSTSSVYVILMLPLYFLSSHKHGDSLDLLLPYLSRFPCLRYLDLSFCNLLQIPDGIGTLQSLETLNLGGNKFVRLPTTIKELSNLQRLNLQHCKQLKYLPELPTTKKNKSSAYYGGLYIFNCPNLSEMEHCYHMVFSWMIQIFKAFLQSSRSLHSLRIVIPGTQIPRWFSKQNVGGSISVNLSPVIMEDPNWMGLACCSLLVAHHDPNNLNDRWQHDNFGSIGYNFQNIQVLHKSDWVLPILLTNDLVTGEIDHLFITFHSQETINAFRSPDEDEMPDLDKVGFTTVIFHHPKEISFQPQLHQRNSFPLVGLNYQLVQTYFTYWIVVSYSCSSGWIQRLHSEASLSRTHKASTVKQLKKGLSNLMGEELWNKLQMRGLLEPIMAQLSSKSRVLKVLNLEGPSLKHAPSDLGNLFHLRFYLPCMQIAKGRDTIFKAKLLPPLMVPTVGIHPKSHIGVQKQNRAGLGPKRTISYYGGGTGGLAGPASGSTRVRCGKTLSVVPRDGEEIRTWRRVPVQLTAIQDGDGLSLEGRRRFVGIHPKSHIGKADNIILWWRNRWTSRPSTNNDSSHTRRVTNTITIIVA 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01239 1275 Pfam Leucine rich repeat 733 788 IPR001611 GO:0005515
Cca04g01239 1275 Pfam C-JID domain 854 926 IPR045344 -
Cca04g01239 1275 Pfam NB-ARC domain 215 420 IPR002182 GO:0043531
Cca04g01239 1275 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 541 IPR044974 GO:0006952
Cca04g01239 1275 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 732 795 IPR044974 GO:0006952
Cca04g01239 1275 Gene3D - 14 181 IPR035897 -
Cca04g01239 1275 ProSiteProfiles TIR domain profile. 15 150 IPR000157 GO:0007165
Cca04g01239 1275 PRINTS Disease resistance protein signature 217 232 - -
Cca04g01239 1275 PRINTS Disease resistance protein signature 293 307 - -
Cca04g01239 1275 PRINTS Disease resistance protein signature 652 668 - -
Cca04g01239 1275 PRINTS Disease resistance protein signature 386 400 - -
Cca04g01239 1275 Gene3D - 182 348 IPR027417 -
Cca04g01239 1275 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Cca04g01239 1275 Gene3D Ribonuclease Inhibitor 516 694 IPR032675 -
Cca04g01239 1275 SMART till_3 16 156 IPR000157 GO:0007165
Cca04g01239 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 445 IPR027417 -
Cca04g01239 1275 Pfam TIR domain 16 175 IPR000157 GO:0007165
Cca04g01239 1275 Gene3D Ribonuclease Inhibitor 719 1113 IPR032675 -
Cca04g01239 1275 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 541 - -
Cca04g01239 1275 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 732 795 - -
Cca04g01239 1275 Gene3D - 351 435 IPR042197 -
Cca04g01239 1275 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Cca04g01239 1275 SUPERFAMILY L domain-like 522 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01239 Cca-Chr4 14751042 14759061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01239 583 795 WRKY Transcription Factor Family AT4G12020 27.570 2.40e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01239 - - ccaj:109792038 1785.39