Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01238 ATGAGTTTTCGATTTTCACCTCCGTCGTTTGATACTTCATATGATACTTTTGACCCTGATACTTCTGATTACCAGGGTCAGCCTTATGGGTTTAACACTCCTGATAAATTTAATCAAAGTCTTGATTCTACTATGAAATTGGCAGTAATAGCATCTATTGTTTTTGGATTGGTGGTAGTAATAGCAATTATAGCTATAGTATATGCCATAATTCAGTGCTTGAAGAAGGCAGGAGAAACAACTCCTGCATATTCCCAGCTTCCAAGTACAGAAAAGGCTTATAATGCTTCAAAGTCATATCCTTCAACTAGTGAAATTGAATTAGTGATACCTCCAGATTCCACGATTCAAGGTTCAAAAGCTGAGTTTGCAACAATGGAAAGATTCCTAAGCAACATCAACAAGGAGAACCCCATCAGATTCTCTCCTGAACAACTTGAGGTAATTACATGGAATTACTCAACCATAGTGGGTTCTGGTGCTTTTGGGGTTGGCTACAAAGGGGAATTGTCCAACGGAGAATACGTGGCTGTCAAAGTTATCAATAGTTTGGATATAGCAATGGAAGAGCAACTCAAAGCAGAAATTGGCACCATTGGAAGAACTTACCATGTCAATCTAGTTCGGCTTTATGGCTTTTGCTTCCACTGGGACAAGCGAGCTCTTGTTTATGAGTTTGTGGAAAATGGTTCTCTCAGCAAGTACTTGTTTGGAAGCCAGAACCAAGACATCGAGTTGGGGAAACTTCATGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAGGAATGTCAACAAAGGATAATTCATTATGATATTAAACCTGAGAATGTTCTTCTTGATTTGAACTTGGGACCGAAGGTAGCAGATTTTGGCCTGGCAAAGCTTTGTAGCAGAGGAAGTAATGTTTCAGTCAATACAAACTTTAGAGGAACAGTGGGATACGCTGCTCCTGAAATGTGGAAGCCTTATCCGGTGACTCACAAGTGTGATGTTTATAGTTTTGGTATTCTTCTCTTTGAAATTATAGGGAGGAGAAGGCATTTTGATGACAACTGCAATGAATCGCAACAATGGTTTCCAAAATGGACATGGAATAAGTTTGAGAATAATGAATTGTCTGTAATGCTTTCACTTTGTGGAATTGAAGAGAAAGACAAGGAGAAAGCCGAAAGAATGTCAAAGGTGGCTCTATGGTGTGTTCAGTATTCACCAAATGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATTGAAATTTCTCCACCTCCATTTCCCTTCCAAAACCTGGAGTCTAGGAAGCCAAGCTTTGCAGATTCAGATACTACATCGTGGCAGACAGAATCTTCTGGAGTAAACGAGCAAAATACATTTCAGATTGAAAAATCTACTTACAGCGTGTTTACTTTCACgttccaaaataGAAGATTCGGGCTTTCAACTGGCTCCTCACGCCTCTACTCAGCACCTTCAACCACAACAACACCACAAGGACGCTCAGGAGTTATAGGTGCCATACGTGTGGTGGGAGAATTGCCTCTACCTAAATTGGCATCAGGTGCCAAAGGAGGAGAATCAGATGTGAGGAGAGAGAATCGTCTTAGGTTGGAGTAA 1635 0.4012 MSFRFSPPSFDTSYDTFDPDTSDYQGQPYGFNTPDKFNQSLDSTMKLAVIASIVFGLVVVIAIIAIVYAIIQCLKKAGETTPAYSQLPSTEKAYNASKSYPSTSEIELVIPPDSTIQGSKAEFATMERFLSNINKENPIRFSPEQLEVITWNYSTIVGSGAFGVGYKGELSNGEYVAVKVINSLDIAMEEQLKAEIGTIGRTYHVNLVRLYGFCFHWDKRALVYEFVENGSLSKYLFGSQNQDIELGKLHEIAIGTAKGIAYLHEECQQRIIHYDIKPENVLLDLNLGPKVADFGLAKLCSRGSNVSVNTNFRGTVGYAAPEMWKPYPVTHKCDVYSFGILLFEIIGRRRHFDDNCNESQQWFPKWTWNKFENNELSVMLSLCGIEEKDKEKAERMSKVALWCVQYSPNDRPLMSTVVKMLEGEIEISPPPFPFQNLESRKPSFADSDTTSWQTESSGVNEQNTFQIEKSTYSVFTFTFQNRRFGLSTGSSRLYSAPSTTTTPQGRSGVIGAIRVVGELPLPKLASGAKGGESDVRRENRLRLE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01238 544 MobiDBLite consensus disorder prediction 524 544 - -
Cca04g01238 544 PANTHER PUTATIVE-RELATED 123 448 - -
Cca04g01238 544 ProSiteProfiles Protein kinase domain profile. 151 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01238 544 PANTHER RUST RESISTANCE KINASE LR10-RELATED 123 448 IPR045874 GO:0004672
Cca04g01238 544 Pfam Protein kinase domain 154 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01238 544 Gene3D Phosphorylase Kinase; domain 1 115 226 - -
Cca04g01238 544 MobiDBLite consensus disorder prediction 530 544 - -
Cca04g01238 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Cca04g01238 544 Gene3D Transferase(Phosphotransferase) domain 1 227 428 - -
Cca04g01238 544 SMART serkin_6 151 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01238 544 SUPERFAMILY Protein kinase-like (PK-like) 133 422 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01238 Cca-Chr4 14692964 14699672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01238 140 433 Receptor kinase-like Gene Family AT1G66980 43.854 1.94e-77 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Cca04g01238 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01238 - - gmx:100820269 680.633