Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01234 ATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGCCTTGGCAAAGAGGTTTTAGAGCCTATGATGGGCACACTTTCAATCATCGTGAATCCAATGAGGTGCCCGTGTTTTACAGATCACATTCTACTCATGCCACCGATGACAGAAGTTCAGGTGGATTAGCTCAACAAAGGTTTTGGGACTACAGAACTCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCATCTAGGAGACAACAAATTAATGTTCACAATGAGAATATGGGAAGGCTCAGAGAGATTCTCCTTCAGACACCTCAAAGATCCACATTCCAACCAAGCACACAAGCTCCCCCAGTGGCAGAAATTCCCAAATCAACAGCTTTGAGCAAGCTTAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTATAGAAACAATGGTGCAAAACCTTTGAAAGAAAAGGAGAGAGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTGAGCCCAATGAAGAGGTGATGCTCACTCGATGCAACCACATGTTTCATGAGGATTGCATAGTACCATGGCTAACAAGCAAAGGGCAGTGCCCAGTTTGTAGGTTTGTGGTTTGTGAGAGAGAGAGGGGGAACCCTGCATCCTTCAACAACAATGACATTGCCAATTTGGAACCTAGCAACCTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGAAAGTATGACTTACTAA 789 0.4373 MSRNMNNFTPLPGPWQRGFRAYDGHTFNHRESNEVPVFYRSHSTHATDDRSSGGLAQQRFWDYRTPLGFHSIPNFPAPPSRRQQINVHNENMGRLREILLQTPQRSTFQPSTQAPPVAEIPKSTALSKLKKVVYDPPPKRYARRVSLYYRNNGAKPLKEKEREKDEDGKRCAICLEDFEPNEEVMLTRCNHMFHEDCIVPWLTSKGQCPVCRFVVCERERGNPASFNNNDIANLEPSNLINGELLSILRAMEEAFQLESMTY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01234 262 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 262 - -
Cca04g01234 262 Pfam Ring finger domain 170 212 IPR001841 -
Cca04g01234 262 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Cca04g01234 262 SUPERFAMILY RING/U-box 160 218 - -
Cca04g01234 262 SMART ring_2 171 211 IPR001841 -
Cca04g01234 262 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 262 - -
Cca04g01234 262 CDD RING-H2_PA-TM-RING 171 212 - -
Cca04g01234 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 228 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01234 Cca-Chr4 14607868 14609885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01234 77 255 C3H Transcription Factor Family AT3G58720 43.005 1.76e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01234 - K19041 gmx:100810607 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01234 04 14607868 14609885 Cca04g01234 04 14607868 14609885 ECH