Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01228 ATGATGTCCAGGTCGTATACCAATCTTTTAGACTTGGCCTCTGGGAATTTCCCGGCAATGGGGAGGGAGACTAGGGAACGGAGGCGGTTGCCGAGGGTTATGAGTGTCCCCGGGTTTCTCACTGAGGTAGATGATCAGGCAGTTAGTGTTTCCTCTGATAATCCGTCAACAGTTACTACAGATAGAATGATCATTGTGGCAAACCAGTTACCGTTAAAGGCAAAGCGAAAAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAACGAGGATTCGTTGCTCTTACAGCTAAAGGATGGACTTCCGGATGACATGGAAGTTCTTTATGTTGGATCTTTGCGTGTTGACATTGATCCGGCGGAACAGGATGATGTGTCGCAGTATTTATTGGATAAATTCAAGTGTGTCCCGACATTTCTACCTGCTGACGTTTTGGCAAAATTTTATGATGGCTTCTGTAAGAGACAATTATGGCCACTTTTTCATTACATGTTACCATTTTCGACGGATAAAAGCCATCGATTTGATCGCACTTTGTGGGAAGCTTATGTGCTAGCAAACAAACTATTTTTTCAAAAGGTAGTTGAAATAATAAACCCAGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGCTGCCAACTTTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGTCCCTTTCCATCATCGGAGATATACAGGACTCTTCCAGTCAGGGAAGAGATACTGAAAGCTTTACTTAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGCTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCAAAGAGGGGTTATTTAGGATTGGAGTATTATGGAAGAACAATCAGTATTAAGATTATGCCTGTTGGAATTCACATGGGTCGGATTGAATCAGTTATGAGAATGGCAGATGAGGAGTGTAAGGTAAGGGAGCTCAAACAGCAATTTGAAGGGAAAACCGTCTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAGACAACATCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATTCATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCGACAGGATTAACAGAATGTTTGGGCGACCTGGTTACGAACCTATTGTTTTTGTTGATAGAGCAGTTCCTATTGCTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATCGTCACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAATATATTGCATGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCAATCCGAGTCAATCCATGGAATGTCGAAGCAACTGCTGAGGCCATGAATGAGGCCATCTCAATGAGTGATGGAGAGAAACTGTTGCGGCATGAGAAGCATTACCGATATGTCAGCACTCATGACGTGGCTTACTGGTCACGTAGTTTCTTGCAAGACATGGAGCGGGCTTGCACAGACCTTCTAAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTTTCAATTGATGCCATGGTTTCAGCTTACAAGAGATCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTATTGTCTATTTTGGAATCACTTAGTGCAGACCCCAAAAATATTGTTTTCATTGTTAGTGGACGGGGAAGGAATAgcttaagtgactggttttcttcatgccaaaaacttggaattgctgcagaacatgggtacttcttgagATGGTCCCATAATGGAGATTGGGAAATTTGTGGCAAGTCCTCCgactttggatggatgcagattgccgaacctgtaatgaaactatatacagaggcaactgatggttcctcaattgaaagaaaagaaagtgctttggtctggcaataccgtgatgcagaccttggttttggatctgctcaagctaaggaaatgttagatcatctagaaagtgttatggccaatgagcctgttgctgtgaagagtggccagtttattgttgaagtgaaaccccaggaagtgagcaaaggatcagatgaggacatgtttgaaatagttagtagtgccatctcaaggaatattcttgccaccaatgcttctgtatttgcttgcacggttggacaaaaaccaagcaaagcaaagtattatctggatgataccactgaggtgacaagcatgctagaatCTTTGGCCGAAGAATCAGATTCTTCACCCTACATAGAAGAAACTGGAGATTCCTCTCGGAGGCAAGTGTGA 2502 0.3441 MMSRSYTNLLDLASGNFPAMGRETRERRRLPRVMSVPGFLTEVDDQAVSVSSDNPSTVTTDRMIIVANQLPLKAKRKEDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKVRELKQQFEGKTVLLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIHAEIQESCDRINRMFGRPGYEPIVFVDRAVPIAEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKLLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRSRSRAILLDYDGTVMPQNSINKSPSKEVLSILESLSADPKNIVFIVSGRGRNSLSDWFSSCQKLGIAAEHGYFLRWSHNGDWEICGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVMANEPVAVKSGQFIVEVKPQEVSKGSDEDMFEIVSSAISRNILATNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDSSPYIEETGDSSRRQV 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01228 833 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 760 826 IPR001830 GO:0003824|GO:0005992
Cca04g01228 833 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 759 - -
Cca04g01228 833 Gene3D - 591 690 IPR023214 -
Cca04g01228 833 Gene3D - 720 823 IPR023214 -
Cca04g01228 833 Gene3D Glycogen Phosphorylase B; 316 529 - -
Cca04g01228 833 TIGRFAM T6PP: trehalose-phosphatase 589 759 IPR003337 GO:0003824|GO:0005992
Cca04g01228 833 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 760 826 - -
Cca04g01228 833 CDD HAD_TPP 593 805 - -
Cca04g01228 833 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 759 IPR001830 GO:0003824|GO:0005992
Cca04g01228 833 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 549 - -
Cca04g01228 833 Pfam Trehalose-phosphatase 595 760 IPR003337 GO:0003824|GO:0005992
Cca04g01228 833 SUPERFAMILY HAD-like 592 813 IPR036412 -
Cca04g01228 833 CDD GT20_TPS 62 545 IPR001830 GO:0003824|GO:0005992
Cca04g01228 833 Gene3D Glycogen Phosphorylase B; 55 315 - -
Cca04g01228 833 Pfam Glycosyltransferase family 20 62 545 IPR001830 GO:0003824|GO:0005992
Cca04g01228 833 MobiDBLite consensus disorder prediction 811 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01228 Cca-Chr4 14466463 14470444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01228 1 821 Trehalose Biosynthesis Gene Families AT1G06410 75.736 0.0 1327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01228 K16055 - gmx:100811463 1599.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01228 04 14466463 14470444 Cca04g01228 04 14466463 14470444 ECH