Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01225 ATGCATTATGCAGAAGCACCTTTGTCTCTATATATACCATGCATGCTCAATTCTTCTAAAACCAACTCACACACCCATTACTCAACACAAACACAAGTCATAGCTATAGATATGGCTTCCCTTAACCACTTGTTTGTTGTGGTATCTATCATTCTTTCTCTTCTATCCTTTTCTGGCAATGCACAACTATCTCCCACTTTTTATGCCACAACATGCCCCAACCTTCAAACCATAGTGCGTAGTGCAATGAGGCAAGCCATTGCTAAAGAAGCTCGCCTTGGTGCCTCCATTCTTCGCTTGTTCTTTCATGATTGCTTTGTCAATGGATGTGATGGATCCATCTTATTGGACGACACTGCGACCTTCACGGGGGAGAAAAATGCAGCACCTAACAGAAACTCAGCGAGGGGATTCGAAGTTATTGATACCATTAAAACCAATGTTGAAGCTGCTTGCACTGCCACCGTGTCTTGTGCAGACATTCTAGCACTTGCTGCAAGAGATGGAGTAGTGCTGCTAGGTGGGCCCTCATGGACAGTTCCTCTGGGCAGAAGAGACGCAAGAAGCGCGAGCCAGAGTGGTGCCAACACCCAAATCCCTTCCCCCTTCTCCGACCTCTCCACTCTCATCTCCATGTTTAGGGCCAAGGGCCTGGGCCCACGCGATCTCACCGCCCTCTCGGGGGCCCACACCATAGGGCAGGCCCAGTGCCAGTTCTTCCGAAGCCGCATATACAACGACACCAACATcgacgccaccttcgccgccgccaggagggccacctgccccgccaccggcgccgacgccaccctcgccccgcTCGACAGCCTCACCCCCACGCGCTTCGACAATGGGTACTACGCCGACCTGGTGAACCGGCGCGGGCTTCTCCACTCCGATCAAGTGCTCTTCAACGGTGGGTCCCAGGACGCGGTTGTGAGAAGCTATGGGGCGGGCAATGCTGCGTTTTTTAGAGACTTTGCTGCTTCGATGGTGAAGTTGGGTAATATCACCCCTCTCACTGGGACCAGTGGTGAGATTAGGAAGAATTGCAGGCTTCTCAACTCATCCTGA 1074 0.4739 MHYAEAPLSLYIPCMLNSSKTNSHTHYSTQTQVIAIDMASLNHLFVVVSIILSLLSFSGNAQLSPTFYATTCPNLQTIVRSAMRQAIAKEARLGASILRLFFHDCFVNGCDGSILLDDTATFTGEKNAAPNRNSARGFEVIDTIKTNVEAACTATVSCADILALAARDGVVLLGGPSWTVPLGRRDARSASQSGANTQIPSPFSDLSTLISMFRAKGLGPRDLTALSGAHTIGQAQCQFFRSRIYNDTNIDATFAAARRATCPATGADATLAPLDSLTPTRFDNGYYADLVNRRGLLHSDQVLFNGGSQDAVVRSYGAGNAAFFRDFAASMVKLGNITPLTGTSGEIRKNCRLLNSS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01225 357 PRINTS Haem peroxidase superfamily signature 94 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Haem peroxidase superfamily signature 174 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Haem peroxidase superfamily signature 222 237 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Haem peroxidase superfamily signature 275 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Haem peroxidase superfamily signature 156 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 ProSitePatterns Peroxidases proximal heme-ligand signature. 222 232 IPR019793 -
Cca04g01225 357 SUPERFAMILY Heme-dependent peroxidases 62 355 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 Gene3D - 66 352 - -
Cca04g01225 357 ProSiteProfiles Plant heme peroxidase family profile. 62 355 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PANTHER PEROXIDASE 55 354 - -
Cca04g01225 357 Pfam Peroxidase 79 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 ProSitePatterns Peroxidases active site signature. 94 105 IPR019794 GO:0004601
Cca04g01225 357 Gene3D Peroxidase, domain 2 200 334 - -
Cca04g01225 357 PRINTS Plant peroxidase signature 273 288 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 289 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 155 165 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 221 233 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 329 342 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 96 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 72 91 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 136 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PRINTS Plant peroxidase signature 174 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 PANTHER PEROXIDASE 72-RELATED 55 354 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca04g01225 357 CDD secretory_peroxidase 62 352 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01225 Cca-Chr4 14437832 14440320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01225 61 351 Peroxidase AT5G05340 65.529 5.59e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01225 K00430 - gmx:100803503 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01225 04 14437832 14440320 Cca04g01225 04 14437832 14440320 ECH