Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01220 ATGTCCGGTGTGGGCCCTATTTCTCAGGATTGGGAACCCGTCGTCCTCCGCAAGAAACCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTCAAAAAATATAATGCTGGGACAAATAAAGCAGCCTCTAGCAGCACTTCCTTGAACACTAAGAGGCTGGACGAGGATACAGAGAATCTAGCTCATGAGAAGGTACCGACTGAACTTAAGAAGGCTGTAATGCAAGCTAGGATGGACAAGAAACTCACTCAGGCTCAGCTTGCTCAACTGATCAACGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCTTAGGGGCTAAACTGCGTGGCAAGAAATAA 429 0.5152 MSGVGPISQDWEPVVLRKKPPTAAAKKDEKAVNAARRSGAEIETLKKYNAGTNKAASSSTSLNTKRLDEDTENLAHEKVPTELKKAVMQARMDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01220 142 Pfam Helix-turn-helix 88 137 IPR001387 -
Cca04g01220 142 ProSiteProfiles Cro/C1-type HTH domain profile. 89 141 IPR001387 -
Cca04g01220 142 MobiDBLite consensus disorder prediction 1 37 - -
Cca04g01220 142 CDD HTH_XRE 85 135 IPR001387 -
Cca04g01220 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Cca04g01220 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Cca04g01220 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Cca04g01220 142 Coils Coil 87 107 - -
Cca04g01220 142 MobiDBLite consensus disorder prediction 50 76 - -
Cca04g01220 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Cca04g01220 142 SMART mbf_short4 86 141 IPR001387 -
Cca04g01220 142 MobiDBLite consensus disorder prediction 21 37 - -
Cca04g01220 142 Gene3D - 71 142 IPR010982 GO:0003677
Cca04g01220 142 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01220 Cca-Chr4 14384408 14387715 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Cca04g01220 MBF1 8.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01220 K03627 - gmx:100500420 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01220 04 14384408 14387715 Cca04g01220 04 14384408 14387715 ECH