Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01214 ATGGAAGAGACAAGAGAAGATGCAGGACCATCAGAGCAAAGGCCATCCAACATGTCTTGGTGGCCTTCAGATTTTGTTCAAAAGTTTGAATCTGTTTCTTTGAGCTCTCAAGATGAGACCTTAAATAATAAAGAATCACCTAGACATTCTAACCAAGATGTCATGTCACCTCAGAAAGCGTCACAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCCAATGGTTTTTATTCAATCATTCCAGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACCTTGGATGATCTTCAGGCTTTGGGTGGAGAAGGTTTTAGGGCTGATGTCATTGTTGTGGATGCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTAGTTAGAGGATTGAATTCAAATCCACCTGCGATGATTAAGAAGATAGCTGGATTAGTTTCTGACTTTTATAAGCGACCAAATGTAGAAAGTCCAGCAAAAGCGGCACACGAGGAATCCTCACACATGTTTGAGAATCGTGGTGTCCAAATGCTAGGGCAAATAAGGCATGGTTCATGCCGTCCTCGTGCTATCTTGTTTAAAGTATTAGCAGATACTGTAGGTCTTGAAAGTAGGCTTATGTTGGGTTTTCCAAATGATGGGGCTGCTGAATGTGTTGACTCGTACAAGCATATGTCAGTGATTGTTGTATTAAACTCTGTGGAACTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACCAAATCAATTCTCATGACACACATTTCTGCCGCAGGAGAGAGTGATTCCGCAGAAAATGATTCCTGTGATTCACCTTTAGAACCAAATAGTCCTTTATATGGGGTTTCAGAGAGTGTTGAAAAGGAGGAAAACCTCCAATTCCATAGACGATTTGAAGTGTCTTCAAATGTATCAGGCCTTCCCTTGCGAAATATGATGTTACGATCAAATACCAGTCTGGACAGGAATTTGAGTTTTTCTCATAGTGAACCCAACATTGCAACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACTGCTAGTTCAAGTCCGGAACATCCATCATTGCGAGCTCATGGACTGTCCAAGCTTAGTGGTGACAGGACTGCTTTTAGAGATTTTGCTGATGATCAGTCATCGAGATCCAGCTATAAGTCAGATGGTGCATCCTCATCAGAAGCTCGTAGGATACGAAGGAGAAGTATCAGCATTACACCGGAGATTGGAGATGATATTGCAAGGGCTGTACGGGCAATGAATGAGACGCTAAAGCAAAACCGACTTCTAAGAGAGCAAGGGGGTGATAGTTCATTGCCCCATTCTCCAAATGATAGAACTAGCAGTGCAGATCTTCATAAAAATGTGTCAAATTTCCATCTTGATGGCCATGAGAGGTCCCCCTTATATTCGCCACACCGTGATGCTGTCATGTCTCAGAAGGCAATGTCCTTGCCCTCTTCTCCACATGATTATAGAGGACAAGCTTCTGAGAGAAGTGGGACGTCAGAATATGCCATGAATAATGAACTGGAGTCTACTTGGAATAAAGTCCTGGAATCACCAATGTTCAGTGATAGACCTCTGTTACCATATGAAGAATGGAATATCAAGTTCTCAGAATTGACTGTTGGAACTCGTGTTGGGATTGGATTCTTTGGTGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTGTTCCTAGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTCAGCCGGCTCCGACATCCAAATGTTATCTTATTTCTTGGAGCATGCACAAAGCCCCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGGTCTTTGTTTTACTTGATCCATGTAAGCGGTCAAAAGAAGAGGCTTAGCTGGCGGAGAAGGCTAAAGATGTTGCGGGACATATGCCGGGGCCTAATGCACATACATCGTATGAAGATTATACACCGTGATGTGAAAAGTGCAAATTGTCTTGTGGATAGGCATTGGACAGTGAAAATATGTGATTTTGGACTATCAAGAATAGTAACAGATTCCCCCATGAGAGATTCTTCGCCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTTATTCGAAGTGAACCATTCACCGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAGCTCTGCACCTTAAATAGGCCATGGGAAGGCGTTCCTCCGGAGAGGGTGGTTTATGCTGTTGCTAATGAGGGTTCCCGATTGGATATTCCTGAAGGCCCTCTAGGCAGGCTGATTTCAGAGTGTTGGGCGGAACCGCGCGAGCGGCCAAGTTGTGAGGAGATCCTCTCTCGTTTGGTGGACATCGAGTACTCAATGAGTTGA 2442 0.4353 MEETREDAGPSEQRPSNMSWWPSDFVQKFESVSLSSQDETLNNKESPRHSNQDVMSPQKASQILWRTGMLSEPIPNGFYSIIPEKRLKKLFDSIPTLDDLQALGGEGFRADVIVVDAEKDRRLSMLKQLIVALVRGLNSNPPAMIKKIAGLVSDFYKRPNVESPAKAAHEESSHMFENRGVQMLGQIRHGSCRPRAILFKVLADTVGLESRLMLGFPNDGAAECVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSESVEKEENLQFHRRFEVSSNVSGLPLRNMMLRSNTSLDRNLSFSHSEPNIATAFGRRSRRKVIAEQRTASSSPEHPSLRAHGLSKLSGDRTAFRDFADDQSSRSSYKSDGASSSEARRIRRRSISITPEIGDDIARAVRAMNETLKQNRLLREQGGDSSLPHSPNDRTSSADLHKNVSNFHLDGHERSPLYSPHRDAVMSQKAMSLPSSPHDYRGQASERSGTSEYAMNNELESTWNKVLESPMFSDRPLLPYEEWNIKFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLFYLIHVSGQKKRLSWRRRLKMLRDICRGLMHIHRMKIIHRDVKSANCLVDRHWTVKICDFGLSRIVTDSPMRDSSPAGTPEWMAPELIRSEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVANEGSRLDIPEGPLGRLISECWAEPRERPSCEEILSRLVDIEYSMS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01214 813 Gene3D Transferase(Phosphotransferase) domain 1 636 812 - -
Cca04g01214 813 Coils Coil 428 448 - -
Cca04g01214 813 CDD STKc_MAP3K-like 563 805 - -
Cca04g01214 813 SUPERFAMILY Protein kinase-like (PK-like) 531 805 IPR011009 -
Cca04g01214 813 MobiDBLite consensus disorder prediction 1 20 - -
Cca04g01214 813 MobiDBLite consensus disorder prediction 496 516 - -
Cca04g01214 813 Pfam Protein tyrosine and serine/threonine kinase 558 805 IPR001245 GO:0004672|GO:0006468
Cca04g01214 813 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 811 - -
Cca04g01214 813 MobiDBLite consensus disorder prediction 32 57 - -
Cca04g01214 813 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Cca04g01214 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Cca04g01214 813 ProSiteProfiles Protein kinase domain profile. 557 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01214 813 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 811 - -
Cca04g01214 813 SMART serkin_6 557 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01214 813 Gene3D Phosphorylase Kinase; domain 1 550 635 - -
Cca04g01214 813 MobiDBLite consensus disorder prediction 359 414 - -
Cca04g01214 813 MobiDBLite consensus disorder prediction 491 516 - -
Cca04g01214 813 MobiDBLite consensus disorder prediction 446 466 - -
Cca04g01214 813 ProSitePatterns Protein kinases ATP-binding region signature. 563 584 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01214 Cca-Chr4 14279786 14290091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01214 1 812 MAP Kinase Kinase Kinase AT3G58640 70.560 0.0 1183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Cca04g01214 PK_Tyr_Ser-Thr 1.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01214 - - gmx:100807193 1515.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01214 04 14279786 14290091 Cca04g01214 04 14279786 14290091 ECH