Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01212 ATGAAAATCACTCTTTTCCCGCACGGTAAACGACTACCGTCGTACTCGTTCGCAAAGCAGCTTCCTCACTCGCCCTCCCTCACCAAACGCCAAATATCCGAAAcgccaccgccgccgccgccgccgctcatggactccgtcgccggagacccgtcctccaccgcccccgcggcggcgcgccccccgccgtcgttcccccgccgcGAGGACTGCTGGAGCGAGGAGGCGACGTTCACGCTCATCGAGGCGTGGGGCGAGCGCTACCTGGAGCTCAACCGCGGCAACCTCCGCCAGAAGCACTGGCAGGAGGTGGCCGACGCCGTCAACGGCCTCCACGTCGGCGTCGCCGGCAAGAAACCGTTCCGCACCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGACGCCGGCTACCGCAGCCCCTGGCCTTTCTTCCCCCGCCTCGACGCCCTCATCGGCGACACTTTCCCGCTCAGAAAAATCTCCCCGCCGGCTGCCGCCAAACCGCCGCCGCCGGCCTGGATGATTTCCTCCCACCCCGTCGGCCCCCGATCCGTCACGCAGAAACGGCCGGCGCCGGTCGTCACGCCGGCCGCCAGAGATGACTCCTCTTTCCGCCGGAATTTCTccgccttcgctgccgccgccgccgctgcggcggaggccgACAGCGGCGATTCGGAGGGGTGGAGGTCGAGTAGCGGCACCGGGAGTGGAAAAAAAGGGAGAGAGAGTGAAAAGGAATTTGAATTTGGGTATAGAGAACTTGCTCAAGCAATTGAGAGGTTCGGTGAGATATATGAGAGAGTGGAGGGTATGAAACAGAGACAAATGGTGGAGTTGGAGAAGCAGAGGATGCAGTTCGCTAAGGATTTGGAATACCAGAGGATGCAACTCTTCATGGAAACGCAGGTTCAGCTTCAGAAACTCAAGCGCACCAAGCATTCTTCTGGAGCTGACAGTTTCTCATAG 1014 0.5 MKITLFPHGKRLPSYSFAKQLPHSPSLTKRQISETPPPPPPPLMDSVAGDPSSTAPAAARPPPSFPRREDCWSEEATFTLIEAWGERYLELNRGNLRQKHWQEVADAVNGLHVGVAGKKPFRTDVQCKNRIDTLKKKYKIEKARVSDSDAGYRSPWPFFPRLDALIGDTFPLRKISPPAAAKPPPPAWMISSHPVGPRSVTQKRPAPVVTPAARDDSSFRRNFSAFAAAAAAAAEADSGDSEGWRSSSGTGSGKKGRESEKEFEFGYRELAQAIERFGEIYERVEGMKQRQMVELEKQRMQFAKDLEYQRMQLFMETQVQLQKLKRTKHSSGADSFS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01212 337 MobiDBLite consensus disorder prediction 176 214 - -
Cca04g01212 337 MobiDBLite consensus disorder prediction 177 191 - -
Cca04g01212 337 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 47 334 - -
Cca04g01212 337 Pfam Myb/SANT-like DNA-binding domain 69 165 IPR044822 -
Cca04g01212 337 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 47 334 IPR044823 -
Cca04g01212 337 MobiDBLite consensus disorder prediction 237 260 - -
Cca04g01212 337 MobiDBLite consensus disorder prediction 15 68 - -
Cca04g01212 337 MobiDBLite consensus disorder prediction 32 46 - -
Cca04g01212 337 Gene3D - 72 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01212 Cca-Chr4 14259968 14266556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01212 42 326 Trihelix Transcription Factor Family AT3G14180 33.784 6.17e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca04g01212 Myb_DNA-bind_4 1.3e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01212 - - lang:109355153 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01212 04 14259968 14266556 Cca04g01212 04 14259968 14266556 ECH