Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01206 ATGCGTCCTCCGCGTAAGAAGGTCGACTTCCTCGGCGGCGACAAAGTCGAGGTCTGCAGCAACGAGGACGGCTTCCTCGGCTCCTACTACGCCGCCACCGTCCTCTCCCGCCTCGACAACGGCCTCTACGTCGTCCGCTACGACACGCTCCTCCAGGACGACGAGTCCCAGCCCCTCTCCGAGACCCTCTTCCCCAAGGAgctccgccccgccccgccgcccctccccgccAAGGACTTCTCCCTCTACCAGCGCGTCGACGCCTTCGACAACGACGGCTGGTGGCTCGGCCAGATCACCGGCCGCTGCGACCACTCCAAATACTATGTCTACTTCGTCACCACCAATGAGGAGATTGCCTACCCCGCCTCCCGAATTAGGGTTCATCAAGAGTGGCTCAATGGGGAGTGGGTTTTGTCCGATTGA 426 0.5657 MRPPRKKVDFLGGDKVEVCSNEDGFLGSYYAATVLSRLDNGLYVVRYDTLLQDDESQPLSETLFPKELRPAPPPLPAKDFSLYQRVDAFDNDGWWLGQITGRCDHSKYYVYFVTTNEEIAYPASRIRVHQEWLNGEWVLSD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01206 141 Pfam Agenet domain 13 73 IPR008395 -
Cca04g01206 141 Gene3D - 1 81 - -
Cca04g01206 141 PANTHER - 8 139 - -
Cca04g01206 141 SMART agenet_At_2 78 134 IPR014002 -
Cca04g01206 141 SMART agenet_At_2 8 76 IPR014002 -
Cca04g01206 141 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01206 Cca-Chr4 14127602 14128427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01206 20 141 PHD Transcription Factor Family AT5G58610 30.464 6.77e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01206 - - gmx:106794115 207.994