Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01202 ATGGGTTTTCGTTTACCTGGCATCAGAAAGGAAATATTTGCAGCAAATCCAGCATCTTCAAAAGTGCCGGATGTGCCaaaggggtatcttgcagtctatgtgggagagaaaatgaagcggtttgtgatccctgtatcatacttgaaccaaccttcattccaagacttgttgaaccaagctgaggaagagtttggatatgatcatcccatgggtggcctcacaattccttgcagtgaagatgtcttccatcatataacttcatgcttgaattga 273 0.1245 MGFRLPGIRKEIFAANPASSKVPDVPKGYLAVYVGEKMKRFVIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCSEDVFHHITSCLN 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01202 90 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 90 IPR003676 GO:0009733
Cca04g01202 90 PANTHER AUXIN-INDUCED PROTEIN 6B 1 90 - -
Cca04g01202 90 Pfam Auxin responsive protein 18 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01202 Cca-Chr4 14020195 14020609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01202 23 89 Calmodulin-binding Proteins AT3G43120 53.731 2.88e-22 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01202 K14488 - gmx:113002344 171.4