Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01200 ATGAGGAGCAGTGTAGGGGAGATTGTTCAGGTAGAAGGAGGACACATTGTTAGGTCCACAGGTAGAAAAGATCGCCACAGCAAGGTTTACACTTCCAAAGGGCCACGCGACCGCCGAGTTAGACTCTCGGCACACACAGCCATTGAGTTCTATGATGTTCAAGACAGGCTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGACTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCTACCACTCATGAGGAAGAACACAATGATGCTGCAGGCTCAAGCGGAATCCTGGCCCTCGaacaacaacaacaacaacgacaacagcagcagcaacagcaacaacaacaacGACAGCAGCAAGAACAGCAATCAGAGTCATGTGGTTACAACTTTCAGCTCCAAAGGCAATTAGGGGCCTTAATTTCACCCCATGTTGACACTGACCCGATGGCTTTGTTTCCCACAACCTCTTCCACTTCCTCCATCAATTTCCAAACCAACAACTCCTCAGAAGATCTTGGCCTATCTCTCCATTGCTTCCAAGACCACCCGGGCCTCATTCATTGGCAACAACCACAACAAGCAGGTGCAAATCAAACACCTTCAAATGAACACCAAATCCAAACCCTTCTGGCCCCAGTTGGGTTTGAGAACCATTATCAAAGAGCTGTGAATTGGAACAATGAAGTAGCAACCACGGATCAGTTGAACAGATTGGGGTTCATGCTCAACTCACAGCCATTTATAGGCCAAGGTTCTGCTTCAGCTTATGCTCAAAGTGGAACTCTTCAGTCCAGTTTCTCATTTCCAATGACTTCCTCTGAGCATCACAGGTCACAGCCAATAGAATTCAAGGTGTGGAAGAGAACCATGAAGTTGCTTCCACTAGGCCACCTTCTGCTTCTCCAAGTTCGATCCACTGACCCCACAACAAGAACTGAAAAATGCtgtagtcttcctaccagGAGTGTCCTCTACCAGATTTGCAACTGTGTGAAGATTCTAGGCACATTGTTATGA 1044 0.4464 MRSSVGEIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELPPWHPTTHEEEHNDAAGSSGILALEQQQQQRQQQQQQQQQQRQQQEQQSESCGYNFQLQRQLGALISPHVDTDPMALFPTTSSTSSINFQTNNSSEDLGLSLHCFQDHPGLIHWQQPQQAGANQTPSNEHQIQTLLAPVGFENHYQRAVNWNNEVATTDQLNRLGFMLNSQPFIGQGSASAYAQSGTLQSSFSFPMTSSEHHRSQPIEFKVWKRTMKLLPLGHLLLLQVRSTDPTTRTEKCCSLPTRSVLYQICNCVKILGTLL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01200 347 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 279 IPR005333 GO:0003700
Cca04g01200 347 Coils Coil 104 133 - -
Cca04g01200 347 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Cca04g01200 347 Pfam TCP family transcription factor 21 131 IPR017887 -
Cca04g01200 347 MobiDBLite consensus disorder prediction 108 129 - -
Cca04g01200 347 PANTHER TRANSCRIPTION FACTOR TCP4 3 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01200 Cca-Chr4 13952413 13954913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01200 6 290 TCP Transcription Factor Family AT3G15030 41.593 1.10e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca04g01200 TCP 7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01200 - - vun:114168475 426.787