Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01194 ATGGAAAACCATGGTGCACTGTCTGAGACCAAGTATTCAtatgacgttttccttagctttagaggcaaagatacgcgtcacacgtttacttgtcatctctatgatgctttgtgtcggaagggaattatcaccttcatggacgatgtggaactgaagattggagatcagcttgctcctgtgcttcttaaagccattgaagaatcaaggatttccattgttgttttctctgaaaactatgcagcctcttcatggtgccttgatgaacttgtgtgtatcaagtcgaaatgtgagcacgtttggcccatcttctacaaagtggatccctcatatgtgaggtatcagaaaggaagctatggtgaggccatgactaagcatgaatcaaggtttgggaaagactgtgacaaggtgcacaaatggagatcagccttgactgacatagccaaCTTGAAAGGAGAACATTTGCAATCAGAACAAGGGAAGGACGAGTCTAAGTTTATTGATGATCTTGTTGACAAGATTTTCATTAAAGTATCTCCAAAAGATTTATCTAGTAATGAGCATATTGTTGGACGGAAGTATCGAGTTGAAGAATTGAAGTCGCTTTTAGATCTTGAGTCTCGTAACGTCacttgcttgttagggattcatggggtaggtggaattggaaaaaccacacttgccaaagctttgtatgactccatttacaagcattttgagagttcgagttttctttccaatgttagagaaacctcaaagcaaaagggcttcaaacatatgcaagaacgactcctatcagagatacttgaagtaaaaaaaatcaagttgaaaagtattgaagaaggaactagagcaataaaaattagacttggtttaaaaagagttcttatagttctcgatgatgttgataacgttgaacaattgaaaaagttggcaaaggaacgtgattggtttggtattgggagtaggatcgtcataaccacaagagataagcatttgctagattttggtggggttgaaaagagatacgaagtgaaagtgctaaatgaacaagagtctttagagctcatttgtcagattgcctttaaaaaaagttatcctgaatcaaactatgaagatttgtcttaccgtgcaatgcgttgttgcaaaggccttccattggccttaaaagtactaggctctcatatgattggaaaagatctgggtgggtggaaggatgcattggatagatatgaaaagaatccacatgaagatgttcaaaaagttcttagaataagttatgatagtttacctttcaatgaaaaaaatatttttcttgacattgcatgcttcttcaaagggaagagattggaatatgtaaaagaagtattagatgcatgtgacttctgctctggggatggcattacaacattagttaataaatctcttttaactattgactatcaatgtcaatgcttggagatgcatgacctattacaagacatgggtagagagattgttagggaggaagcgtggaatgaagttggtgaacgtagcagattatgGCATCATGAAGATGTTCTTCAAGTACTAGCTGATAATAATGGAAGTAGACAAATTCAAGGAATAATGCTTGATCCTCCAAAAAGAGAAGAAATTAATTGTATTAATACTGTATTTGAGAAGATGAAAAATCTTAGAATTCTCATTGTTCATAACACAAGTTTTTCACAAGAGCCTCGTTTTCTCCCAAATAACTTAAGGCTACTTGATTGGAAGTGCTATCCTTCGCAGTCTTTCCCATTAAGTTTTTATCCAAGGAAAATTGTGACCATCAATTTAAGAGGATGTCCTTTACTCGTATTGGAAAAGCCATTTCAGAGATTTGAGCATTTGACTTCTATGGATTTCTCTAATTGTCACATGATTACTAAATTTCCTGATGTGTCTGGCACAATGAATTTAAGAGAACTGAGACTTGATAAATGCAAGAACCTAGTTAGCATTCATGAATCAGTTGGACATCTTGCTAACCTTGTTTTCCTAAGTGCTTCTCAATGCACTCAACTTCAAAGTTTTGTGCCAACAATCTATTTGCCATCTCTCAGACACCTCTCCTTTAACTCATGCAAAAGACTCACACACTTTCCAAACATCATGGGAACAATGGATATGCCATTAAAGATTCATATGTTTGATACAGCTATTGAAGAGCTTCCAAAATCCATTAAGAAACTTATTGGGCTTAATTATCTTGACATGACATATTGTATGAGACTCCAACATTTACCAAGTAGCTTATTTATGTTGCCAAACTTTGTCACGTTACATATTGGAAGATGTCATCAACTTCGAGAGTCATTTAGAATGTCCAAAGGAAACCATTCAACATGTCCTAAATTAGAGACATTACATTTTGAGGATGCTAATCTATTAGAGGAAGATATTCACATGATTATTTATAATTTTCCTAACTTGAAGGACTTAAATTTATCATGGAACAACTTTGTGTCTCTCCCAACATGCATTGAAGAATATACTAAGTTGACATGTCTTGACGTAAGTTATTGTAAGATGCTTCGAGAAATTCCAGAACTACCGTCAAGTGTTGAAAAAGTAGATGCAACACTTTGTAATTCCTTAGCTTCGGAGACATCAAACATGTTATGGTCTCAGGTGCGTAAAGAGACGAGGAGATTAGAAGTGATGATGCCAAAAAGAAAGATTCCAGAATGGTTTGATTATGTTAGCAAGGGAAGCTTTCTAATTTTTAAGGCTCGTGGGAAGTTTCCTGCAATTGCTTTAGCATTTGTGTTTGGAGAAATGGATGCCAAGGCTAAAAAGACATTGCCGATTGAGTGGCGAGCTATTGGCATGAACTTATTCATTGAGGGTGAACGAAGACAGTGTCATGCTTTTGCTATGGGTGAGAATCATGTGTTCTTGTGCAACCTACAAGTTTTGCTAAGTTTAGAGGTGTGGGATGTAGGTAATGATTGGAAGACCATAGAGGTTCATTGTGAAACAGAGCTAAGTCTATGTTCATGGGGAGTTTATGTGTACAAGCATGAGACTAACATGGAGGATATCCAATTCATGAGTCATGATCCCAACTCTTCTTTAGTTCGAAGTCTTCACGAAATTAGTGAGGAAGAGCAAATAAGAAATTTTGAATTGGATGAAACCTATAGGGTGCTTGCTATGATGATCAAACATTTAGATAAACTTTGGTATGTTATAGACGAGTCACCTGAATTACTGGAAACCAAACAATTTTTGGTAGAATTCTTGGGGAAAGTGTTTAGGAGATATCTTATGAATTCAAGAGAGGGAAAAAATACTTTAGGGTTGAACATTGAAGATGATGAGGAAATGGATGTTAATTTAGTGATGCTTGTGGTAATCACTGTAATAGTGTCAAGTGTTGAAGGGTTTCTTCAAGAAGATTCAAGCTTTGAAGATGATGTAAATGCATATGATTTGAATCATAACACTATTTGTAGTGCTTGTTTAGAATTGTTGTCAATTTCAATCAAATTATTTTTTCCCGTCCTCTTTCTCCATCTTTTTATTGAGTATGTAAAGAGATGA 3567 0.2243 MENHGALSETKYSYDVFLSFRGKDTRHTFTCHLYDALCRKGIITFMDDVELKIGDQLAPVLLKAIEESRISIVVFSENYAASSWCLDELVCIKSKCEHVWPIFYKVDPSYVRYQKGSYGEAMTKHESRFGKDCDKVHKWRSALTDIANLKGEHLQSEQGKDESKFIDDLVDKIFIKVSPKDLSSNEHIVGRKYRVEELKSLLDLESRNVTCLLGIHGVGGIGKTTLAKALYDSIYKHFESSSFLSNVRETSKQKGFKHMQERLLSEILEVKKIKLKSIEEGTRAIKIRLGLKRVLIVLDDVDNVEQLKKLAKERDWFGIGSRIVITTRDKHLLDFGGVEKRYEVKVLNEQESLELICQIAFKKSYPESNYEDLSYRAMRCCKGLPLALKVLGSHMIGKDLGGWKDALDRYEKNPHEDVQKVLRISYDSLPFNEKNIFLDIACFFKGKRLEYVKEVLDACDFCSGDGITTLVNKSLLTIDYQCQCLEMHDLLQDMGREIVREEAWNEVGERSRLWHHEDVLQVLADNNGSRQIQGIMLDPPKREEINCINTVFEKMKNLRILIVHNTSFSQEPRFLPNNLRLLDWKCYPSQSFPLSFYPRKIVTINLRGCPLLVLEKPFQRFEHLTSMDFSNCHMITKFPDVSGTMNLRELRLDKCKNLVSIHESVGHLANLVFLSASQCTQLQSFVPTIYLPSLRHLSFNSCKRLTHFPNIMGTMDMPLKIHMFDTAIEELPKSIKKLIGLNYLDMTYCMRLQHLPSSLFMLPNFVTLHIGRCHQLRESFRMSKGNHSTCPKLETLHFEDANLLEEDIHMIIYNFPNLKDLNLSWNNFVSLPTCIEEYTKLTCLDVSYCKMLREIPELPSSVEKVDATLCNSLASETSNMLWSQVRKETRRLEVMMPKRKIPEWFDYVSKGSFLIFKARGKFPAIALAFVFGEMDAKAKKTLPIEWRAIGMNLFIEGERRQCHAFAMGENHVFLCNLQVLLSLEVWDVGNDWKTIEVHCETELSLCSWGVYVYKHETNMEDIQFMSHDPNSSLVRSLHEISEEEQIRNFELDETYRVLAMMIKHLDKLWYVIDESPELLETKQFLVEFLGKVFRRYLMNSREGKNTLGLNIEDDEEMDVNLVMLVVITVIVSSVEGFLQEDSSFEDDVNAYDLNHNTICSACLELLSISIKLFFPVLFLHLFIEYVKR 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01194 1188 Gene3D Ribonuclease Inhibitor 541 716 IPR032675 -
Cca04g01194 1188 PRINTS Disease resistance protein signature 381 395 - -
Cca04g01194 1188 PRINTS Disease resistance protein signature 836 852 - -
Cca04g01194 1188 PRINTS Disease resistance protein signature 212 227 - -
Cca04g01194 1188 PRINTS Disease resistance protein signature 288 302 - -
Cca04g01194 1188 Pfam NB-ARC domain 192 428 IPR002182 GO:0043531
Cca04g01194 1188 SMART till_3 13 149 IPR000157 GO:0007165
Cca04g01194 1188 Gene3D Ribonuclease Inhibitor 717 872 IPR032675 -
Cca04g01194 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 440 IPR027417 -
Cca04g01194 1188 SUPERFAMILY L domain-like 487 857 - -
Cca04g01194 1188 Gene3D - 346 430 IPR042197 -
Cca04g01194 1188 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1021 IPR044974 GO:0006952
Cca04g01194 1188 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Cca04g01194 1188 Gene3D - 177 336 IPR027417 -
Cca04g01194 1188 Gene3D - 7 176 IPR035897 -
Cca04g01194 1188 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 151 IPR035897 -
Cca04g01194 1188 Pfam TIR domain 14 183 IPR000157 GO:0007165
Cca04g01194 1188 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01194 Cca-Chr4 13842719 13847875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01194 14 776 WRKY Transcription Factor Family AT4G12020 32.443 1.88e-91 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01194 - - gmx:100801890 1473.76