Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01190 ATGGAAATGGAAGCTTTTTTATGGGGTGATGACATTGATGGAGATGCCCCTAAGGGGAAAAGTGATGGTTTTGGAGGGAACAATGGGGTAATTGGAAGTGGGTGTGGTTCGTCTTTCTCTCTGGTTTTGGATGGGGAGAGAGGGGAGCTTGTGGAGGCACCTGTGAAGTTGGAAAGGAAAGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAGAAGGAGGGCAAGGATAAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTATCAAGATGGACAAGGCGTCATTACTTGGCGAGGTTATTAGACATTTGAAAGAGCTTAAGAAGAATGCAGCACAAGCATGTGAAGGCTTGATGATTCCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAACGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGGTTATTGTCTGATATAAGACAAGCACTAGATGCTCTTCATCTCATGATAATAAGGGCAGATATTGCAACCTTGGAAGGCAGAATGAAGAATGTGTTTGTGATCATTAGCTGCAAAGAACAGAACTTTGAAGACGCCGCGTACCGGCAGTTTCTCGCCGGATCTGTTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTTTCACAGGACCTGTTAGGAACCAGGAAAAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTGGAAGATTTCTTGTAA 777 0.435 MEMEAFLWGDDIDGDAPKGKSDGFGGNNGVIGSGCGSSFSLVLDGERGELVEAPVKLERKGVSTERSIEALKSHSEAERRRRARINAHLDTLRSVIPGAIKMDKASLLGEVIRHLKELKKNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIIRADIATLEGRMKNVFVIISCKEQNFEDAAYRQFLAGSVHQALRSVLNRFSVSQDLLGTRKRRRISIFSSSSLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01190 258 Gene3D - 64 126 IPR036638 GO:0046983
Cca04g01190 258 MobiDBLite consensus disorder prediction 1 21 - -
Cca04g01190 258 CDD ACT_UUR-ACR-like 157 228 - -
Cca04g01190 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Cca04g01190 258 PANTHER TRANSCRIPTION FACTOR BHLH30 13 258 IPR045847 GO:0003700|GO:0006355
Cca04g01190 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 122 IPR036638 GO:0046983
Cca04g01190 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Cca04g01190 258 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 258 - -
Cca04g01190 258 SMART finulus 75 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01190 Cca-Chr4 13764383 13766120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01190 56 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.796 2.80e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g01190 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01190 - - gmx:100788819 422.55