Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01189 ATGGCTGCTATCACCGATAACAATGACAGTGATGAACAATTTTTTAGATACTTCAACGATCCCAACTACACCAAAAACCTATTGTTGATATCCACAAGTTTCTTTGCAACACTCTTGTTACTCCTCATCGCCCACTACCTCTACCTCAGGTGCACCCGATCCAGCCACCGCCTCACCATCACCCTCACTGCGCTTCCTGACCACGCTAACTTCACCGCTGAACCGTATAATATAGGTCTTGACGCTACTATCATAGCGTCGTTGCCAACTTTCACCGTCAGAGCGAAAACTCTAGAAGCTTCGACTGCTAACGATGATGGTTGTTCGGCGGTGAACTGCGTGGTGTGCTTATGTGCCCTAGGAGGGGGAGAAAAGGTCAAATTGCTTCCCAACTGTAACCATTTTTTTCACATGGATTGCATTGACACGTGGTTGAATTGTCACTCAACATGTCCTTTGTGTCGAGCCGAGGTCAAGCCAAGACTTCGACTCAAACAAGAGGATCGAGAGGGTCCTATTACTCATTCCTTTAATGGCGTAAGTATACATTCAATTAGTAATGATGATAGTAATGGTGAGTCACAAAAAAGTAATAGTTCTGTTTCACAGTTGAGTCCATTTAGAAGGATTCTTAGTGAGAAAAGATCTATTAGAAATATCCAATCCTCTAGCTATGATGATCATGGAGTTGATCATGATTTGGAGAGACAATGA 714 0.4328 MAAITDNNDSDEQFFRYFNDPNYTKNLLLISTSFFATLLLLLIAHYLYLRCTRSSHRLTITLTALPDHANFTAEPYNIGLDATIIASLPTFTVRAKTLEASTANDDGCSAVNCVVCLCALGGGEKVKLLPNCNHFFHMDCIDTWLNCHSTCPLCRAEVKPRLRLKQEDREGPITHSFNGVSIHSISNDDSNGESQKSNSSVSQLSPFRRILSEKRSIRNIQSSSYDDHGVDHDLERQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01189 237 Pfam Ring finger domain 112 155 IPR001841 -
Cca04g01189 237 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 29 237 - -
Cca04g01189 237 PANTHER RING FINGER DOMAIN-CONTAINING 29 237 - -
Cca04g01189 237 SMART ring_2 113 154 IPR001841 -
Cca04g01189 237 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Cca04g01189 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 161 IPR013083 -
Cca04g01189 237 MobiDBLite consensus disorder prediction 218 237 - -
Cca04g01189 237 MobiDBLite consensus disorder prediction 177 206 - -
Cca04g01189 237 MobiDBLite consensus disorder prediction 167 206 - -
Cca04g01189 237 CDD RING-H2_PA-TM-RING 113 155 - -
Cca04g01189 237 SUPERFAMILY RING/U-box 106 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01189 Cca-Chr4 13748462 13749175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01189 7 237 C3H Transcription Factor Family AT2G42360 34.553 1.26e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01189 K19038 - gmx:100783358 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01189 04 13748462 13749175 Cca04g01189 04 13748462 13749175 ECH