Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01182 atgcaaagaaacaacactggaatgcatgcagcatgtgcagcatgcaagcatCAAAGGAAGAAGTGCAGTGAAAACTGCATATTGGCACCTTACTTTCCATCAAACAGAAGCCGCGAGTTCCATGCTGTGCACAAGGTTTTTGGTGTAAGCAACATAACCAAGTTGGTGAAGAATGCTAAAGAGGAAGATCGAAGAAGGGTTGTGGATTCATTGATATGGGAAGCATGTTGTAGGCAAAGGGATCCCATACATGGTCCCTATGGAGAGTACACAAAAGTTTACAATGAGTATAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAGGTCAAAACCAGTTGTTGCAGTTTCCCCCTCTAGGATTAAAGTCTGTGCAAGATTTGATTGCTTGCAAAGGGGAGCACAAAGCAGAAGTTGATAATATTGCATTGGATAATTATCTGCATGGGAAAAAGAATGGTATTATTCATGATTCTGATATTTATAATACTTATTGTTCAAATTATTTGCAAGAGTTTCAGAATATGAGAGCTGAAGTTGTGATCCCGTTTCAGCAGCACTCTCAACCATACTATATTGCAGGTGATCAATTCAATCAATGA 600 0.355 MQRNNTGMHAACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKRFRGQNQLLQFPPLGLKSVQDLIACKGEHKAEVDNIALDNYLHGKKNGIIHDSDIYNTYCSNYLQEFQNMRAEVVIPFQQHSQPYYIAGDQFNQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01182 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 145 - -
Cca04g01182 199 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Cca04g01182 199 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Cca04g01182 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 3 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01182 Cca-Chr4 13677623 13681914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01182 9 98 AS2 family AT1G06280 60.000 2.62e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca04g01182 LOB 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01182 - - gmx:100809173 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01182 04 13677623 13681914 Cca04g01182 04 13677623 13681914 ECH