Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01180 ATGGTGGCGCCTCTTCTCCTTCGTTCCCTCTGGTCCTCCACCAGAAAGTCCCCCCCTCCCTTCGCCCCCTCGCGCTTCCTCTCGCGCGCCTTCGCAGCCGCTCCCGTCGCCGCCGCATCCGCCGCATCTCCCGCCGCCTCCCTCGACCCCAGCCGCCTCCGCAACGTCGCCGTCATCGCCCATGTCGACCACGGCAAGACCACCCTCATGGACCGCCTCCTCCGCCAGTGCGGCGCCGACATCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCGCGTCCAAGGTCACGTCGATTGCGTGGAAGGAGAATGAGCTGAACATGGTTGATACTCCCGGACACGCTGATTTTGGTGGCGAGGTTGAACGTGTTGTTGGGATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGACCACTTGCACAAACCAAATTTGTTCTTGCAAAGGCCTTGAAGTTTGGGTTGCGCCCTATTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACTTGGGTGCTACAGAGGAGCAGCTAGACTTCCCTGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCTCCACGTTTACCAAGGATCCTCCTGCTGATGCCAAAAATATGTCACAGTTGCTTGATACTGTTGTAAGACATGTTCCATCACCTAGTGCAAGCATTGATAAGCCTTTCCAAATGCTGGTTTCAATGATGGAAAAAGATTTCTATCTTGGGCGAATTTTGACTGGACGCATATACTCGGGGGTTGTCCGTGTTGGTGACAGGGTTCATGGACTACGTAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTTATGAAGAAGAAAGGTACAAACATGGTTTTAATTGATTGTGCTGGAGCTGGTGATATAATATCAGTTGCTGGCCTGTCAAGTCCATCAATTGGCCATACAGTGGCTACTGTGGAGGTTATGTCTGCTTTGCCCACAATTGAATTGGACCCTCCAACAATTTCCATGACTTTTGGTGTAAATGACTCTCCATTGGCTGGTCGTGATGGTACTCATTTGACTGGGGGGAGAATTGGTGACCGACTGATGGCTGAAGCTGAAACTAACCTTGCCATAAATGTGCTTCCTGGCTTATCTGAATCATTTGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATATTAATTGAGAATATGAGGCGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAATGGTCAGAAGCTTGAGCCCGTAGAAGAAGTCACTATTGAGGTAAATGATGAGCACGTTGGTTTGGTAATGGAGGCCTTGTCTCACAGACGAGCTGAGGTTACTGACATGGGTCCTGTCTCAGGAACTGTTGGTAGAACTAGATTGACCTTGACTTGTCCATCAAGGGGCCTGGTTGGGTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCATGCATATGAAAAATTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTGGTGTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCTAGAGGGACTCTTTTTGTATATCCTGGAATGGAGTCGTATGATGGAATGATAGTTGGAGAGCATTCACGGGATACAGATCTTGATGTCAATCCAGTGAGGTCTAAAGAACTTACAAATGTGCGTGCTGCTTCCAAAGACGAGAATGTGAAGCTGACTCCCCCTCGCCTTATGACACTCGAAGAAGCTATAGGATATGTAGCTTCGGATGAGCTTATTGAGGTTACACCAAAATCCATCCGTTTACGGAAGAAATACCTTGATGTTAACAAGCGTAAAACCATGAGCAGAAGGCCAAAGGAATGA 1986 0.4869 MVAPLLLRSLWSSTRKSPPPFAPSRFLSRAFAAAPVAAASAASPAASLDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSIAWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKFGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASSTFTKDPPADAKNMSQLLDTVVRHVPSPSASIDKPFQMLVSMMEKDFYLGRILTGRIYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLIDCAGAGDIISVAGLSSPSIGHTVATVEVMSALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLTLTCPSRGLVGYRSVFSSDTRGTGFMHRAFHAYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGTLFVYPGMESYDGMIVGEHSRDTDLDVNPVRSKELTNVRAASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKSIRLRKKYLDVNKRKTMSRRPKE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01180 661 PRINTS GTP-binding elongation factor signature 55 68 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 PRINTS GTP-binding elongation factor signature 95 103 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 PRINTS GTP-binding elongation factor signature 115 125 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 PRINTS GTP-binding elongation factor signature 131 142 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 PRINTS GTP-binding elongation factor signature 167 176 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 660 - -
Cca04g01180 661 CDD TypA_BipA 53 248 - -
Cca04g01180 661 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 51 249 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 SUPERFAMILY Translation proteins 198 354 IPR009000 -
Cca04g01180 661 SUPERFAMILY EF-G C-terminal domain-like 452 567 IPR035647 -
Cca04g01180 661 CDD BipA_TypA_C 452 532 IPR035651 -
Cca04g01180 661 Pfam Elongation factor Tu domain 2 270 343 IPR004161 GO:0005525
Cca04g01180 661 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 660 - -
Cca04g01180 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 258 IPR027417 -
Cca04g01180 661 Pfam Elongation factor G C-terminus 450 533 IPR000640 -
Cca04g01180 661 Gene3D bipa protein 538 653 IPR042116 -
Cca04g01180 661 Gene3D Translation factors 251 354 - -
Cca04g01180 661 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 53 653 IPR006298 GO:0005525
Cca04g01180 661 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 88 103 IPR031157 -
Cca04g01180 661 CDD BipA_III 360 437 - -
Cca04g01180 661 Pfam Elongation factor Tu GTP binding domain 52 247 IPR000795 GO:0003924|GO:0005525
Cca04g01180 661 Gene3D - 51 249 IPR027417 -
Cca04g01180 661 Gene3D Elongation Factor G (Translational Gtpase), domain 3 361 645 - -
Cca04g01180 661 TIGRFAM small_GTP: small GTP-binding protein domain 54 193 IPR005225 GO:0005525
Cca04g01180 661 CDD BipA_TypA_II 256 353 - -
Cca04g01180 661 Gene3D - 443 537 - -
Cca04g01180 661 SUPERFAMILY EF-G C-terminal domain-like 358 441 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01180 Cca-Chr4 13651099 13659703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01180 52 176 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 1.90e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01180 K06207 - gmx:100789218 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01180 04 13651099 13659703 Cca04g01180 04 13651099 13659703 ECH