Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01169 ATGCTAAGAAAGATGGATGAAGGAGAAATCACACATGCTTTCCATCAGAACCTAACTGCTTCTTCTGCTGCATCAAATAATAACAATCCTCCTCATCATGTTTTGAAGAGGAAGAGGAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACCCTCATGGCTACCAACAGATTCTTGTGTGAAACTTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAAAAAGAGGGTTTATGTGTGTCCTGAGAAGAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGACTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGAGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCCCACTCCAAAACCTGTGGTACCAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGTATCAGACATGAACACCTCGTTAGGGGGTAACATTGGTTACAACGTTATGGGAACATCCCTAGGCCATAACATGGCTACCCATTTTCCCTCAATTTTCAAGCCAGTTTCAAACACTGACGAAACAAGTAACCAAACATCTAGGGGGCTACCCCTTTGGATGGGTCAAACATCTTCTCAGGCTCAAGAAACAATGGTCAACAGCAATTTGCGTGAGATTCATCATCAACTTGGTTCTGCCACAAGCTCAGGAACAATATATGGTGGCAACTCACTTGTCCAATGCTCAAATCTTCCACCTTCTAATAACTATCAGCTAAGTTGGGTGTTTGGAACTAAGCTTTCCAATACTAGCCAAGAGCTAACAACTAGCACCACTTCACTTCCTCTATGCAACAACAACACAAGTGTTCCTTCCTTGTATAGTTCCCAACACCAACCCCACCAAACATCCTCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCTCAAATTGGAGCAACCTCGAGTGACCCTTCATGGCTTGGGAGCTTAGGTTTGAAATGTGGTAACAGCCAAGGTCAAGATGGGAATAATAACAAGTTTAGTGGCATGTACGGTTCAAGTTTTGTGCTGAGCGAGGCAGATAACTCTGCATGTGACATGTCACAAATGCACCCTCTCAAACGTAGACACATTCTGAATGAAGAAAGTGGAGGGGGGCAAACTAGGGACTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCAACATTCATCAACCAACGGGTGGATTTGATTTGA 1386 0.4481 MLRKMDEGEITHAFHQNLTASSAASNNNNPPHHVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEAKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAVSDMNTSLGGNIGYNVMGTSLGHNMATHFPSIFKPVSNTDETSNQTSRGLPLWMGQTSSQAQETMVNSNLREIHHQLGSATSSGTIYGGNSLVQCSNLPPSNNYQLSWVFGTKLSNTSQELTTSTTSLPLCNNNTSVPSLYSSQHQPHQTSSNMSATALLQKAAQIGATSSDPSWLGSLGLKCGNSQGQDGNNNKFSGMYGSSFVLSEADNSACDMSQMHPLKRRHILNEESGGGQTRDFLGVGVQNHLPTFINQRVDLI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01169 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Cca04g01169 461 Gene3D Classic Zinc Finger 61 88 - -
Cca04g01169 461 MobiDBLite consensus disorder prediction 18 47 - -
Cca04g01169 461 Gene3D Classic Zinc Finger 98 189 - -
Cca04g01169 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 460 - -
Cca04g01169 461 PANTHER F-BOX ASSOCIATED PROTEIN 29 460 - -
Cca04g01169 461 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Cca04g01169 461 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01169 Cca-Chr4 13442497 13445354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01169 29 447 IDZ Gene Family AT1G03840 50.102 2.56e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g01169 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01169 K25870 - gmx:100790620 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01169 04 13442497 13445354 Cca04g01169 04 13442497 13445354 ECH