Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01167 ATGACTCAGTGCAGTGATCTTGTAAACAATCGTCATAACATCATAGTGGAGGGACGAAAGGATAGTTTAATTAGAACTTGTCCTACGTGTGGCCATCATATCAAATGCCAAGAGCAGGGTGGTGGAATTCATGACTTACCTGGACTACCTGCTGGAGTGAAGTTTGATCCCACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTTCGTTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATTCCTACTCTTGAAGGCGAAAATGGAATCTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGCTACGCCATTTCTTCCACAGGCCTTCCAAGGCATACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCAGATGAAGATGGAAGTGAGACACGTTGGCACAAAACAGGTAAAACTAGGCCAGTCTACAACAGTTCCAAGTTGAAAGGGTACAAGAAAATTCTTGTGCTCTACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAGACAAATTGGGTCATGCACCAATACCACCTTGGCTGTGATGAAGAGGAGAAAGAAGGGGAGTTAGTGGTTTCCAAAGTTTTCTACCAAACACAGCCTAGACAGTGTGGTTCCCTAATCAAAGACTCATCACTTCCTGGGAAACATATGAAGGGTCAAAGTGTGCATCAGGTGGTAAGTAACAACAAAAACAATAATGGGTTTGTTGAGTACTATCATTCAAATTTCATATCATTTGATCAAGGTGGCCAACATAGACCTACCACTGCTCAAGTAATTTCCCATTTTCCTGTCCATGAAGGTGCTCCTTTCATTCCTTGA 855 0.4246 MTQCSDLVNNRHNIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLLRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNSSKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGCDEEEKEGELVVSKVFYQTQPRQCGSLIKDSSLPGKHMKGQSVHQVVSNNKNNNGFVEYYHSNFISFDQGGQHRPTTAQVISHFPVHEGAPFIP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01167 284 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 283 IPR044799 GO:0003700
Cca04g01167 284 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Cca04g01167 284 MobiDBLite consensus disorder prediction 122 150 - -
Cca04g01167 284 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
Cca04g01167 284 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 283 - -
Cca04g01167 284 MobiDBLite consensus disorder prediction 128 147 - -
Cca04g01167 284 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
Cca04g01167 284 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01167 Cca-Chr4 13423350 13427799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01167 25 284 NAC Transcription Factor Family AT4G28500 63.214 5.09e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g01167 NAM 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01167 - - gmx:100797459 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01167 04 13423350 13427799 Cca04g01167 04 13423350 13427799 ECH