Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01166 | ATGATATTTGTGTTTGttctgtggctctttctctttctctctcctctctctctctctctAACCCAAGACGGCCTTTTCCTCCTTGAAGCCCGGCGCCGCCTCTCCGACCCGGAAAACGCCCTCTCCTCGTGGGACGCCTCCGCCGCCACCCCATGTCGGTGGCGCGGAGTCTCCTGCCACCCTCTCACCGCCGCCGTCGCCGCCGTCAACCTCTCAAACCTCGGCCTCTCCGGCCCCTTCCCCGCCGTGCTCTGCCGcctcccctccctctccgccctcactctctccttcaacctcatcaactccaccctcgccgacgccgccgcatgcagccgcctccgccaccTCGACCTCTCCCAAAACAACCTCGTCGGCCCCATTCCGCCGTCCCTCGCCGCCATCACCCCCCTCCGCCACATCGACCTCTCCGGCAACAACCTCACCGGCGACATTCCGGCGAGCCTTGGAGAACTCCCTCACCTCGAATCCCTCTTCATTGTGAGCAACCTTCTCAGCGGAACCATCCCCTCCTCTCTCGGAAACCTCGCTTCGCTTAAACACCTTCAACTCGCTTATAACCCTTTCTCGCCTAGTCGAATACCGAGTCAACTCGGCAACCTCACCGAACTCGAAACGCTCTTTCTCGCTGGCTGCAACCTTGTGGGACCCATTCCTGAGTCTCTCAGTAACCTCGTTGGCTTAACGAACCTCGACTTGTCGCAGAATAGCCTCACCGGTTTCGTTCCACGGTGGCTCACGCGCCTCAAGCGCGTGAACCAAATCGAGCTTTATAAAAACAACCTCTCTGGGGACTTGCCCGAAGGAATGTCGAACATGACGAGTTTGAAATTCTTCGACGCGTCGAGTAACGAGTTGACTGGGACGATTCCCGCCGAGTTGTGCGAGTTGCCACTCGCGTCGTTGAACTTATATGAGAACAAACTCGAAGGCTCTTTGCCGAGGGTTATTGCGCGTTCTCCCAATCTTTATGAACTCAAATTGTTTAGCAACAAACTCGTTGGGACGTTGCCGAGTGATTTGGGGAGTAACTCGCCGTTGAACCACATCGATGTTTCGTTTAACTCGTTTTCCGGGGAGATTCCGGCGAACCTCTGTCGGCGGGGGGAGTTTGAGGAGCTGCTCCTGATATACAATTCGTTTTCCGGGGAAATTCCGGCGAGTCTCGGGGGTTGCAAGAGTTTGAAGAGGGTTCGGTTGAGGAACAATAACCTCTCTGGAAGTGTTCCTGATGGGTTCTGGGGTTTGCCCCATTTGTATTTGCTTGAGCTTTTGGATAATTCTCTTTCTGGGCACATTTCCAAGGCTATTTCTGGTGCTTACAATTTGTCAAATTTGTTGCTTTCGAATAACCGGTTTTCTGGGTCGATTCCTAAGGAAATTGGGTTGTTGGATAGCCTTGTGGAGTTTGCTGCTAGTAATAATAATTTTTCGGGTTGGATTCCGGGGAGTATGAAGAAGTTGAGCCAGTTGGTTAATGTTGATCTTAGTTATAATCAGCTTTCTGGAGAGCTTTTTGGTGGAATTGGTGAATGGAGTAAGGTCACTGACATTAATCTGTCAAATAATAGGTTAAATGGAAGTGTTCCAAGTGAATTAGGAAGCTTGCCTTTGCTTAATTATCTTGATCTTTCTTGGAACAATTTCTCTGGGGAGATTCCGTTGCATTTGCAGAATTTGAAGCTTTCTGAGTTGAATTTGTCTTACAACCAGCTTTCTGGGGATATTCCTCCCCTTTATGCCAATGACAAGTATAAGACGAGTTTTATAGGGAATCCTGGCCTCTGTGGTCATCTTTTTGGGCTTTCTGATTGTTCTGGTAAGAGTAGGAATTGGAGGTATAAGTGGATTTTGGGGTCCATGTTTGTGTTTGCTGGAGTTGTGTTCATTATCGGGGTGGCATGGTTTTACTTTAGGTTCAAGAAGGTGAAGAAACCGAAGAAAAGGTTCAGCACTTCGAGGTGGAAGTCGTTTCACAAGCTTGGGTTTAGTGAGTTTGAGGTTGGTAAATTACTGAGTGAGGACAATGTGATAGGAAGTGGAGCATCTGGGAAGGTGTATAAGGTGGTGTTGAGCAATGGTGAGGTGGTGGCTGTGAAGAAATTGTGTGGAGCACCTAGGAATGTTGATGAAAGAGTTGGTTCGGGGAAAGATGAATTTGATGCAGAAGTTGAGACGCTGGGGAGGATTAGGCACAAGAATATTGTGAggttgtggtgttgctgcaacagtggggatcacaggcttttggtatatgaatacatgccaaatgggagcttggctaatttgttaaaggatagaaagaagagcttgttggattggccaaccaggcataaaattgctcttgatgctgctgaggggctttcttatttgcaccatgactgtgtccctcccattgttcatagagatgtcaaatccaacaacattttggtggatggggagtttgtggcaaaagttgcagattttggagttgccaaaatGGTTACTGGACTCAGCCAAGGGACACAAACAATGTCTGGGATTGCAGGATCTTATGGCTACATTGCACCAGAATACGCTTATACTCTGAGGGTTAATGAGAAGTGTGATATATATAGCTTTGGCGTGGTCATTTTGGAGTTGGTAACTGGAAGACCCCCTATTGACCCAGAAGAGTATGGTGAGAATGATTTGGTGAAATGGGTTTCCTCTGCATTGGAACATGAAGGACTGGATCATGTGATTGATCCTACATTGGACTCCAAATACAGGGAAGAAATCAACAAGGTATTGAGTATAGGGCTTCATTGTACCACTTTCGTTCCAACAGCTCGCCCTACAATGAGAAAAGTGGTTAAAATGCTTCAGGAAGCAACTTCAGTTACCAAATGTAAGGGTGAAATACCATGTTACAATGAAGGCCCGTCTCATAGTATCAGTGAAGTGTAG | 2946 | 0.4165 | MIFVFVLWLFLFLSPLSLSLTQDGLFLLEARRRLSDPENALSSWDASAATPCRWRGVSCHPLTAAVAAVNLSNLGLSGPFPAVLCRLPSLSALTLSFNLINSTLADAAACSRLRHLDLSQNNLVGPIPPSLAAITPLRHIDLSGNNLTGDIPASLGELPHLESLFIVSNLLSGTIPSSLGNLASLKHLQLAYNPFSPSRIPSQLGNLTELETLFLAGCNLVGPIPESLSNLVGLTNLDLSQNSLTGFVPRWLTRLKRVNQIELYKNNLSGDLPEGMSNMTSLKFFDASSNELTGTIPAELCELPLASLNLYENKLEGSLPRVIARSPNLYELKLFSNKLVGTLPSDLGSNSPLNHIDVSFNSFSGEIPANLCRRGEFEELLLIYNSFSGEIPASLGGCKSLKRVRLRNNNLSGSVPDGFWGLPHLYLLELLDNSLSGHISKAISGAYNLSNLLLSNNRFSGSIPKEIGLLDSLVEFAASNNNFSGWIPGSMKKLSQLVNVDLSYNQLSGELFGGIGEWSKVTDINLSNNRLNGSVPSELGSLPLLNYLDLSWNNFSGEIPLHLQNLKLSELNLSYNQLSGDIPPLYANDKYKTSFIGNPGLCGHLFGLSDCSGKSRNWRYKWILGSMFVFAGVVFIIGVAWFYFRFKKVKKPKKRFSTSRWKSFHKLGFSEFEVGKLLSEDNVIGSGASGKVYKVVLSNGEVVAVKKLCGAPRNVDERVGSGKDEFDAEVETLGRIRHKNIVRLWCCCNSGDHRLLVYEYMPNGSLANLLKDRKKSLLDWPTRHKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILVDGEFVAKVADFGVAKMVTGLSQGTQTMSGIAGSYGYIAPEYAYTLRVNEKCDIYSFGVVILELVTGRPPIDPEEYGENDLVKWVSSALEHEGLDHVIDPTLDSKYREEINKVLSIGLHCTTFVPTARPTMRKVVKMLQEATSVTKCKGEIPCYNEGPSHSISEV | 981 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01166 | 981 | ProSiteProfiles | Protein kinase domain profile. | 678 | 958 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01166 | 981 | SUPERFAMILY | L domain-like | 41 | 369 | - | - | |
Cca04g01166 | 981 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 805 | 817 | IPR008271 | GO:0004672|GO:0006468 | |
Cca04g01166 | 981 | SMART | LRR_typ_2 | 231 | 254 | IPR003591 | - | |
Cca04g01166 | 981 | SMART | LRR_typ_2 | 398 | 421 | IPR003591 | - | |
Cca04g01166 | 981 | SMART | LRR_typ_2 | 87 | 111 | IPR003591 | - | |
Cca04g01166 | 981 | SMART | LRR_typ_2 | 182 | 207 | IPR003591 | - | |
Cca04g01166 | 981 | SMART | LRR_typ_2 | 279 | 303 | IPR003591 | - | |
Cca04g01166 | 981 | SMART | LRR_typ_2 | 494 | 514 | IPR003591 | - | |
Cca04g01166 | 981 | SUPERFAMILY | RNI-like | 261 | 583 | - | - | |
Cca04g01166 | 981 | Pfam | Leucine rich repeat | 137 | 194 | IPR001611 | GO:0005515 | |
Cca04g01166 | 981 | Pfam | Leucine rich repeat | 233 | 292 | IPR001611 | GO:0005515 | |
Cca04g01166 | 981 | Gene3D | Ribonuclease Inhibitor | 19 | 169 | IPR032675 | - | |
Cca04g01166 | 981 | ProSitePatterns | Protein kinases ATP-binding region signature. | 684 | 707 | IPR017441 | GO:0005524 | |
Cca04g01166 | 981 | PANTHER | RECEPTOR-LIKE PROTEIN KINASE 5 | 3 | 960 | - | - | |
Cca04g01166 | 981 | Pfam | Leucine rich repeat N-terminal domain | 22 | 59 | IPR013210 | - | |
Cca04g01166 | 981 | Pfam | Leucine Rich Repeat | 545 | 566 | IPR001611 | GO:0005515 | |
Cca04g01166 | 981 | Pfam | Leucine Rich Repeat | 112 | 131 | IPR001611 | GO:0005515 | |
Cca04g01166 | 981 | ProSiteProfiles | Leucine-rich repeat profile. | 567 | 589 | IPR001611 | GO:0005515 | |
Cca04g01166 | 981 | Gene3D | Ribonuclease Inhibitor | 277 | 614 | IPR032675 | - | |
Cca04g01166 | 981 | SMART | serkin_6 | 678 | 958 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01166 | 981 | Gene3D | Phosphorylase Kinase; domain 1 | 648 | 760 | - | - | |
Cca04g01166 | 981 | Pfam | Protein kinase domain | 680 | 952 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01166 | 981 | SUPERFAMILY | Protein kinase-like (PK-like) | 678 | 954 | IPR011009 | - | |
Cca04g01166 | 981 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 3 | 960 | - | - | |
Cca04g01166 | 981 | Gene3D | Transferase(Phosphotransferase) domain 1 | 761 | 967 | - | - | |
Cca04g01166 | 981 | Gene3D | Ribonuclease Inhibitor | 170 | 276 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01166 | Cca-Chr4 | 13405445 | 13409024 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01166 | 15 | 975 | Receptor kinase-like Gene Family | AT1G28440 | 57.841 | 0.0 | 1104 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Cca04g01166 | Pkinase | 5.2e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01166 | - | - | ccaj:109805711 | 1898.63 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g01166 | 04 | 13405445 | 13409024 | Cca04g01166 | 04 | 13405445 | 13409024 | ECH |