Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01166 ATGATATTTGTGTTTGttctgtggctctttctctttctctctcctctctctctctctctAACCCAAGACGGCCTTTTCCTCCTTGAAGCCCGGCGCCGCCTCTCCGACCCGGAAAACGCCCTCTCCTCGTGGGACGCCTCCGCCGCCACCCCATGTCGGTGGCGCGGAGTCTCCTGCCACCCTCTCACCGCCGCCGTCGCCGCCGTCAACCTCTCAAACCTCGGCCTCTCCGGCCCCTTCCCCGCCGTGCTCTGCCGcctcccctccctctccgccctcactctctccttcaacctcatcaactccaccctcgccgacgccgccgcatgcagccgcctccgccaccTCGACCTCTCCCAAAACAACCTCGTCGGCCCCATTCCGCCGTCCCTCGCCGCCATCACCCCCCTCCGCCACATCGACCTCTCCGGCAACAACCTCACCGGCGACATTCCGGCGAGCCTTGGAGAACTCCCTCACCTCGAATCCCTCTTCATTGTGAGCAACCTTCTCAGCGGAACCATCCCCTCCTCTCTCGGAAACCTCGCTTCGCTTAAACACCTTCAACTCGCTTATAACCCTTTCTCGCCTAGTCGAATACCGAGTCAACTCGGCAACCTCACCGAACTCGAAACGCTCTTTCTCGCTGGCTGCAACCTTGTGGGACCCATTCCTGAGTCTCTCAGTAACCTCGTTGGCTTAACGAACCTCGACTTGTCGCAGAATAGCCTCACCGGTTTCGTTCCACGGTGGCTCACGCGCCTCAAGCGCGTGAACCAAATCGAGCTTTATAAAAACAACCTCTCTGGGGACTTGCCCGAAGGAATGTCGAACATGACGAGTTTGAAATTCTTCGACGCGTCGAGTAACGAGTTGACTGGGACGATTCCCGCCGAGTTGTGCGAGTTGCCACTCGCGTCGTTGAACTTATATGAGAACAAACTCGAAGGCTCTTTGCCGAGGGTTATTGCGCGTTCTCCCAATCTTTATGAACTCAAATTGTTTAGCAACAAACTCGTTGGGACGTTGCCGAGTGATTTGGGGAGTAACTCGCCGTTGAACCACATCGATGTTTCGTTTAACTCGTTTTCCGGGGAGATTCCGGCGAACCTCTGTCGGCGGGGGGAGTTTGAGGAGCTGCTCCTGATATACAATTCGTTTTCCGGGGAAATTCCGGCGAGTCTCGGGGGTTGCAAGAGTTTGAAGAGGGTTCGGTTGAGGAACAATAACCTCTCTGGAAGTGTTCCTGATGGGTTCTGGGGTTTGCCCCATTTGTATTTGCTTGAGCTTTTGGATAATTCTCTTTCTGGGCACATTTCCAAGGCTATTTCTGGTGCTTACAATTTGTCAAATTTGTTGCTTTCGAATAACCGGTTTTCTGGGTCGATTCCTAAGGAAATTGGGTTGTTGGATAGCCTTGTGGAGTTTGCTGCTAGTAATAATAATTTTTCGGGTTGGATTCCGGGGAGTATGAAGAAGTTGAGCCAGTTGGTTAATGTTGATCTTAGTTATAATCAGCTTTCTGGAGAGCTTTTTGGTGGAATTGGTGAATGGAGTAAGGTCACTGACATTAATCTGTCAAATAATAGGTTAAATGGAAGTGTTCCAAGTGAATTAGGAAGCTTGCCTTTGCTTAATTATCTTGATCTTTCTTGGAACAATTTCTCTGGGGAGATTCCGTTGCATTTGCAGAATTTGAAGCTTTCTGAGTTGAATTTGTCTTACAACCAGCTTTCTGGGGATATTCCTCCCCTTTATGCCAATGACAAGTATAAGACGAGTTTTATAGGGAATCCTGGCCTCTGTGGTCATCTTTTTGGGCTTTCTGATTGTTCTGGTAAGAGTAGGAATTGGAGGTATAAGTGGATTTTGGGGTCCATGTTTGTGTTTGCTGGAGTTGTGTTCATTATCGGGGTGGCATGGTTTTACTTTAGGTTCAAGAAGGTGAAGAAACCGAAGAAAAGGTTCAGCACTTCGAGGTGGAAGTCGTTTCACAAGCTTGGGTTTAGTGAGTTTGAGGTTGGTAAATTACTGAGTGAGGACAATGTGATAGGAAGTGGAGCATCTGGGAAGGTGTATAAGGTGGTGTTGAGCAATGGTGAGGTGGTGGCTGTGAAGAAATTGTGTGGAGCACCTAGGAATGTTGATGAAAGAGTTGGTTCGGGGAAAGATGAATTTGATGCAGAAGTTGAGACGCTGGGGAGGATTAGGCACAAGAATATTGTGAggttgtggtgttgctgcaacagtggggatcacaggcttttggtatatgaatacatgccaaatgggagcttggctaatttgttaaaggatagaaagaagagcttgttggattggccaaccaggcataaaattgctcttgatgctgctgaggggctttcttatttgcaccatgactgtgtccctcccattgttcatagagatgtcaaatccaacaacattttggtggatggggagtttgtggcaaaagttgcagattttggagttgccaaaatGGTTACTGGACTCAGCCAAGGGACACAAACAATGTCTGGGATTGCAGGATCTTATGGCTACATTGCACCAGAATACGCTTATACTCTGAGGGTTAATGAGAAGTGTGATATATATAGCTTTGGCGTGGTCATTTTGGAGTTGGTAACTGGAAGACCCCCTATTGACCCAGAAGAGTATGGTGAGAATGATTTGGTGAAATGGGTTTCCTCTGCATTGGAACATGAAGGACTGGATCATGTGATTGATCCTACATTGGACTCCAAATACAGGGAAGAAATCAACAAGGTATTGAGTATAGGGCTTCATTGTACCACTTTCGTTCCAACAGCTCGCCCTACAATGAGAAAAGTGGTTAAAATGCTTCAGGAAGCAACTTCAGTTACCAAATGTAAGGGTGAAATACCATGTTACAATGAAGGCCCGTCTCATAGTATCAGTGAAGTGTAG 2946 0.4165 MIFVFVLWLFLFLSPLSLSLTQDGLFLLEARRRLSDPENALSSWDASAATPCRWRGVSCHPLTAAVAAVNLSNLGLSGPFPAVLCRLPSLSALTLSFNLINSTLADAAACSRLRHLDLSQNNLVGPIPPSLAAITPLRHIDLSGNNLTGDIPASLGELPHLESLFIVSNLLSGTIPSSLGNLASLKHLQLAYNPFSPSRIPSQLGNLTELETLFLAGCNLVGPIPESLSNLVGLTNLDLSQNSLTGFVPRWLTRLKRVNQIELYKNNLSGDLPEGMSNMTSLKFFDASSNELTGTIPAELCELPLASLNLYENKLEGSLPRVIARSPNLYELKLFSNKLVGTLPSDLGSNSPLNHIDVSFNSFSGEIPANLCRRGEFEELLLIYNSFSGEIPASLGGCKSLKRVRLRNNNLSGSVPDGFWGLPHLYLLELLDNSLSGHISKAISGAYNLSNLLLSNNRFSGSIPKEIGLLDSLVEFAASNNNFSGWIPGSMKKLSQLVNVDLSYNQLSGELFGGIGEWSKVTDINLSNNRLNGSVPSELGSLPLLNYLDLSWNNFSGEIPLHLQNLKLSELNLSYNQLSGDIPPLYANDKYKTSFIGNPGLCGHLFGLSDCSGKSRNWRYKWILGSMFVFAGVVFIIGVAWFYFRFKKVKKPKKRFSTSRWKSFHKLGFSEFEVGKLLSEDNVIGSGASGKVYKVVLSNGEVVAVKKLCGAPRNVDERVGSGKDEFDAEVETLGRIRHKNIVRLWCCCNSGDHRLLVYEYMPNGSLANLLKDRKKSLLDWPTRHKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILVDGEFVAKVADFGVAKMVTGLSQGTQTMSGIAGSYGYIAPEYAYTLRVNEKCDIYSFGVVILELVTGRPPIDPEEYGENDLVKWVSSALEHEGLDHVIDPTLDSKYREEINKVLSIGLHCTTFVPTARPTMRKVVKMLQEATSVTKCKGEIPCYNEGPSHSISEV 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01166 981 ProSiteProfiles Protein kinase domain profile. 678 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01166 981 SUPERFAMILY L domain-like 41 369 - -
Cca04g01166 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Cca04g01166 981 SMART LRR_typ_2 231 254 IPR003591 -
Cca04g01166 981 SMART LRR_typ_2 398 421 IPR003591 -
Cca04g01166 981 SMART LRR_typ_2 87 111 IPR003591 -
Cca04g01166 981 SMART LRR_typ_2 182 207 IPR003591 -
Cca04g01166 981 SMART LRR_typ_2 279 303 IPR003591 -
Cca04g01166 981 SMART LRR_typ_2 494 514 IPR003591 -
Cca04g01166 981 SUPERFAMILY RNI-like 261 583 - -
Cca04g01166 981 Pfam Leucine rich repeat 137 194 IPR001611 GO:0005515
Cca04g01166 981 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515
Cca04g01166 981 Gene3D Ribonuclease Inhibitor 19 169 IPR032675 -
Cca04g01166 981 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Cca04g01166 981 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 3 960 - -
Cca04g01166 981 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Cca04g01166 981 Pfam Leucine Rich Repeat 545 566 IPR001611 GO:0005515
Cca04g01166 981 Pfam Leucine Rich Repeat 112 131 IPR001611 GO:0005515
Cca04g01166 981 ProSiteProfiles Leucine-rich repeat profile. 567 589 IPR001611 GO:0005515
Cca04g01166 981 Gene3D Ribonuclease Inhibitor 277 614 IPR032675 -
Cca04g01166 981 SMART serkin_6 678 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01166 981 Gene3D Phosphorylase Kinase; domain 1 648 760 - -
Cca04g01166 981 Pfam Protein kinase domain 680 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01166 981 SUPERFAMILY Protein kinase-like (PK-like) 678 954 IPR011009 -
Cca04g01166 981 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 3 960 - -
Cca04g01166 981 Gene3D Transferase(Phosphotransferase) domain 1 761 967 - -
Cca04g01166 981 Gene3D Ribonuclease Inhibitor 170 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01166 Cca-Chr4 13405445 13409024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01166 15 975 Receptor kinase-like Gene Family AT1G28440 57.841 0.0 1104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca04g01166 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01166 - - ccaj:109805711 1898.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01166 04 13405445 13409024 Cca04g01166 04 13405445 13409024 ECH