Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01162 ATGCGGTCTGTCTCTTGTTTGGGCAAAAAGAATGAGCCAACTACTGCATTTTCCTCAGTAGAGAGTAAACAGACCCCATTGCTTATTCTTGACAACAAAAATAGTAAGGATTTGCTCACTTCCCATGACCTGCATGAACAGAGCAATGAACTACAGGAAAATCAGAATCATCTCTTTAGTTCTCCATTAGAAGTCAATATGCAGGTGCAATATTGTTCTACAGGCCCAGATAATTATTCTTTCCAACAATCAGGATATGCTGTTGAAAAATCAAGGTCAAATTTAAAGTCATACATAGGTCACTTGGCAGAGCAAACTTACATGCATAGGTCATTGCCTCTTGGTTGTCGGAGCGTTAGAAGCAGGCAGAAATCAGCAGCCAAGGTGGATGTGATCGCTGGTGAGAGGGATGCCACAACAAATATCATGGATGAAGCTGCTGGTATCTTTGTCAGAGAGGAGATTAACGAAGGTGAAATGGAAGCCACTATACTGAATGCTAGTAGTTCAGAGAGATCGTGCTATGAAGATGATGATATTTATCAAGCAATAGGTGATGAGTTTAATAATCTGATGCATAATAATGATGCATATCTGGCTGGATTTAGTAGCAATTCTGAGAACCTACTAGATGGAAGCCACTATAGtgtggatggtgaggaagatgtggatatagatgacaatgttgttgttgatgatgatgatgggcaaattgatcttgatgttgaagatTACATAATTGGAGGAAACTCATAG 756 0.3545 MRSVSCLGKKNEPTTAFSSVESKQTPLLILDNKNSKDLLTSHDLHEQSNELQENQNHLFSSPLEVNMQVQYCSTGPDNYSFQQSGYAVEKSRSNLKSYIGHLAEQTYMHRSLPLGCRSVRSRQKSAAKVDVIAGERDATTNIMDEAAGIFVREEINEGEMEATILNASSSERSCYEDDDIYQAIGDEFNNLMHNNDAYLAGFSSNSENLLDGSHYSVDGEEDVDIDDNVVVDDDDGQIDLDVEDYIIGGNS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01162 251 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 3 115 - -
Cca04g01162 251 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 3 115 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01162 Cca-Chr4 13370898 13371653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01162 83 115 Homeobox Transcription Factor Family AT1G28420 66.667 1.14e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01162 - - gmx:100797480 178.718