Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01161 ATGGGTGTTGATTATTACAAGATCTTGCAGGTTGATAAGAACGCCAGCGATGATGACTTGAAGAAAGCTTACAGAAAACTTGCTATGAAATGGCACCCTGATAAGAACCCCAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAGATTTCCGAAGCATACGAGGTGCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAATACGGAGAAGAGGGCCTGAAGGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACGACTTACTTCTCCACAGGAGATATGCCGGGATCGTTCCGGTTCAATCCAAGGAATGCTGATGACATTTTTGCAGAGTTTTTTGGGTTCTCAAGCCCATTTGGTGGAATGGGTGGGAGAGGTGGTGGTGGAGGCATGAGATCAAGGTTCCGTGGAGGTATGTTTGGTGATGATATGTTTGCCTCTTTTGGGGAAGGAGGAGGAGTACATATGAGTCAAGGTGCACCTCGAAAAGCTCCTCCAATTGAAAACAAATTGCCCTGCACTCTCGAGGAGATATATAAAGGGACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCTGATGCCAGTGGCCAAACCATGCCGGTGGAGGAGATCTTAACCATTAATGTCAAGCCAGGTTGGAAAAAGGGAACAAAGATCACCTTCCCTGAAAAGGGCAATGAACAACCAAATGTGACACCTGCTGACCTAGTTTTCATCATCGATGAAAAACCGCATGGTGTCTTCACTCGTGACGGAAATGACCTTGTGGCCACCCAGAAGATTTCTCTTGCAGAGGCCTTAACTGGTTATACAGTGCACCTCACTACCCTGGATGGTAGAAACTTAACCATACCAATCAACAATGTTATTCATCCCAATTATGAAGAGGTTGTCCCAAGAGAAGGAATGCCACTTCCAAAGGATCCATCAAAGAAGGGCAACTTAAGGATAAAGTTCAACATCAAGTTCCCAACAAGACTCACTGATGAACAGAAATCAGGAATCAGGAAACTCTTGGCTCCCTAA 1035 0.4493 MGVDYYKILQVDKNASDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGTTYFSTGDMPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGMRSRFRGGMFGDDMFASFGEGGGVHMSQGAPRKAPPIENKLPCTLEEIYKGTTKKMKISREIADASGQTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLVATQKISLAEALTGYTVHLTTLDGRNLTIPINNVIHPNYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPTRLTDEQKSGIRKLLAP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01161 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 343 - -
Cca04g01161 344 CDD DnaJ 4 59 IPR001623 -
Cca04g01161 344 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 343 - -
Cca04g01161 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 336 IPR008971 GO:0006457|GO:0051082
Cca04g01161 344 SUPERFAMILY Chaperone J-domain 3 129 IPR036869 -
Cca04g01161 344 SMART dnaj_3 3 62 IPR001623 -
Cca04g01161 344 Pfam DnaJ C terminal domain 169 327 IPR002939 -
Cca04g01161 344 Pfam DnaJ domain 4 67 IPR001623 -
Cca04g01161 344 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cca04g01161 344 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cca04g01161 344 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cca04g01161 344 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cca04g01161 344 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cca04g01161 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 168 248 IPR008971 GO:0006457|GO:0051082
Cca04g01161 344 CDD DnaJ_C 167 330 - -
Cca04g01161 344 Gene3D - 248 328 - -
Cca04g01161 344 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cca04g01161 344 Gene3D - 168 246 - -
Cca04g01161 344 Gene3D DnaJ domain 3 155 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01161 Cca-Chr4 13363930 13367838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01161 5 69 C2H2 Transcription Factor Family AT1G74250 42.029 4.71e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01161 K09510 - gmx:100797487 600.127