Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01160 ATGCTCGCGGTGTCACCTTTGAGGAGCACCAAAGATGAAAAGAACCAAGGAGCGATGGAGGGTTTTTCGATGGCAACAACAACAACGGATGATGTTGACTTTGGCGACCTTTCTGAAGGTAACTTGTTGGAGAGCATCAACTTCGACGATCTCTTCGTCGACATCGATGTTGACGGAGATGTCTTGCCGGACCTGGAAATGTTCGGCGAGTTCTCCGTCAGCGCCGGCGAAGATTCGTCGGAGATGAACTCTTCGGGGGAGAACAGCAAGGTGGAGAATGATGAGAGTAATGTTATAACTGCTTCCAAGAAAGAAGAGGAAGATAAAAGTTCTTCAAACCGAGGAGAAGAGATAGTGAGCAAGAGAGATGAATCCGTGGTGGTGGACCCGGCACCACCAAAGGATGGTGGAAAGGGAAGAAAATCTTCATCAGCTCAATCGAAGAATAATAGTAGTAATAGTAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGACGATTTGTGCAAGCAGTGGAACAGCTAGGAGTGGATAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCTCATAGGAAACATTTGCTGGCGCGTGAGGCAGAAGCAGCAAGCTGGAGTCAAAGGAGGCAAATGTATGGAGTAGGGAAGAGAGAGGGGAGTGCATGGGTGGCACCAACCATGGGTTTCCCTCCTCATCCAATGCACCATTTTAGACCCCTTCATGTATGGGGGCACCCTTCCATGCACATGTGGCCAAAACATTTGCCACATTcaccaccaccaccaccactctcatggccaccaccacATCAAGACCCTTCATTTTGGCACCAACGGGCTCCAAACACATTAATCCCAGGAACAGCTTGTTTCCCACAACCTCTGACACCAACGAGATTTGGGAGTCCTCCTGTCCCCGGCATTCCACCCCATGCCATGTACAAACCAGTACCAGATCACGCCATTGCTGTCCCTCCTCCCAGGACCTTATTCGACTTTCATCCGTCAAAGGAGTGCATAGATGCAGCAATTGGAGATGTTTTATCAAAACCATGGCTGCCACTACCTCTTGGACTTAAGGCTCCAGCTCTTGATAGTGTGATGAATGAATTACAGAGACAAGGAATTCCAAACATTCCACCCTCTAGTGCTTGA 1227 0.4645 MLAVSPLRSTKDEKNQGAMEGFSMATTTTDDVDFGDLSEGNLLESINFDDLFVDIDVDGDVLPDLEMFGEFSVSAGEDSSEMNSSGENSKVENDESNVITASKKEEEDKSSSNRGEEIVSKRDESVVVDPAPPKDGGKGRKSSSAQSKNNSSNSNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMYGVGKREGSAWVAPTMGFPPHPMHHFRPLHVWGHPSMHMWPKHLPHSPPPPPLSWPPPHQDPSFWHQRAPNTLIPGTACFPQPLTPTRFGSPPVPGIPPHAMYKPVPDHAIAVPPPRTLFDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPALDSVMNELQRQGIPNIPPSSA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01160 408 Pfam Myb-like DNA-binding domain 164 213 IPR001005 -
Cca04g01160 408 Gene3D - 158 219 - -
Cca04g01160 408 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 408 - -
Cca04g01160 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 217 IPR017930 -
Cca04g01160 408 MobiDBLite consensus disorder prediction 1 31 - -
Cca04g01160 408 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 408 IPR044825 GO:0003700|GO:0045893
Cca04g01160 408 MobiDBLite consensus disorder prediction 140 160 - -
Cca04g01160 408 SUPERFAMILY Homeodomain-like 159 218 IPR009057 -
Cca04g01160 408 MobiDBLite consensus disorder prediction 76 96 - -
Cca04g01160 408 MobiDBLite consensus disorder prediction 73 165 - -
Cca04g01160 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 161 215 IPR006447 GO:0003677
Cca04g01160 408 MobiDBLite consensus disorder prediction 97 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01160 Cca-Chr4 13300381 13305386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01160 1 325 G2-like Transcription Factor Family AT5G44190 43.503 3.51e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca04g01160 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01160 - - gmx:100799248 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01160 04 13300381 13305386 Cca04g01160 04 13300381 13305386 ECH