Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01153 ATGGTGAAGGACCCAAACGCAAACGCAAAAGCCAAAACCAAGAAACCCCACAATGGCCACGACCTTCACTACCGCGGCGTCAGAAAGCGGCCCTGGGGCCGTTACGCCGCCGAGATCAGAGACCCCAACAAGAAAACGCGGGTTTGGTTAGGCACCTTTGACACCGCCGAAGAAGCTGCGCGTGCTTATGATGCGGCGGCGCGTCAGTTCCGCGGCCCCAAAGCCAAGACCAACTTCCCCAACACGACAGCAACCAACGAGAACACCACCAACAACAACAGCCCCAGCCAGAGCAGCACCGTGGAGTCCTCCACCCCGGAGCGTGAGCCCACGCGCCGCCCCAACAACCGCTTCCCCTTCCTCCACCAGCTCCTCGTTTCTCCCGTCTCTCCCATGGGACCGGTTCAGCCGGTGTTTTTCCTGGACCGCCCCGGCTTGTTTCCTGTCCGGTTCGAACCGGTTCCGGTTCAGAGCGACTCCGATTCGTCCTCTGTGGTGGATTGTCAACCCAAAAGAGAGCTAAATCTGGATCTTAACCTCGCTCCTCCTATGGATGTTTAA 561 0.59 MVKDPNANAKAKTKKPHNGHDLHYRGVRKRPWGRYAAEIRDPNKKTRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPNTTATNENTTNNNSPSQSSTVESSTPEREPTRRPNNRFPFLHQLLVSPVSPMGPVQPVFFLDRPGLFPVRFEPVPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01153 186 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Cca04g01153 186 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Cca04g01153 186 MobiDBLite consensus disorder prediction 1 31 - -
Cca04g01153 186 MobiDBLite consensus disorder prediction 75 105 - -
Cca04g01153 186 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Cca04g01153 186 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Cca04g01153 186 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 105 - -
Cca04g01153 186 MobiDBLite consensus disorder prediction 69 117 - -
Cca04g01153 186 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Cca04g01153 186 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Cca04g01153 186 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Cca04g01153 186 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 105 - -
Cca04g01153 186 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01153 Cca-Chr4 13245131 13246170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01153 21 184 AP2-EREBP Transcription Factor Family AT5G44210 53.977 1.90e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca04g01153 AP2 2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01153 K09286 - gmx:100775465 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01153 04 13245131 13246170 Cca04g01450 04 19900291 19901362 ECH
Cca04g01153 04 13245131 13246170 Cca04g01153 04 13245131 13246170 ECH
Cca04g01153 04 13245131 13246170 Cca08g02442 08 58550262 58551902 ECH