Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01152 ATGAGTAGTGTTTGTCCAGAACACAAATTCCAACTCCAACTTCTCTCCCTAGAGAAATACAATAGGGACAATGACACCCCACCAAGGAAGCTCCTCACCCAGCGCGCCACCGTGTACGACGGTGGCCACTATGACTATGACTCTGATGATGACTCCGGCGACCCCTACGCCTCCGACGAATTCCGTATGTATGAATTCAAGGTCCGGCTGTGTATGCGCAGCCGGAGTCATGACTGGACAGACTGTCCCTTTCAGCATCCCGGCGAGAAGGCACGTCGCCGTGATCCTCGCCGGTATCACTACTCAGGGTCAGTCTGTCCAGAGTTTCGCCGCGGCAATTGCAGCCGCGGCGATGCATGTGAATTTTCTCATGGAGTGTTTGAGTCCTGGCTGCACCCTGATAGGTATAGAACCGAGGCTTGCAAAGATGGCAAGAATTGCAAGCGAAAAGTTTGCTTCTTCGCTCACACCCCTCGCCAACTTAGGGTTTTGCCTCTAGACAATGACAACAACATCCGCAACCAAAAGTGTTCAATTATGACCCCTCATAGTAATAACAACAATAACCATGGTTGTCTGTTTTGTCAATGCTCTTCTTCTACATGCTCACCAACCTCTACCTTGTTTGGTGTGTCTCATTTTTCTCCTACTTTGTCACCTTCCTCGCCTTCTTCCCCTACTAGGTTTGAGACTGATGACCCTCATGAAAGTGTTGTGAAGGATGTGTTGTATGATATTGTGTCTTCCATGGATGGTTTGAATTTCGGTGAGGCTTCACCCGTGTCTGCTTCAAAGCCTCGCAATTTGTCTTGGCTTAATGTTTCTGAGCTTGATGTTTCTGAGAATCAGCAACAGTTCATTTTTTCACCAACCATCACTGCTGGTGGAAGGTTTTCCAACAATGGGAATGGGAGGTATCTGAGGGAAGAAAGTGGGGTTGTTGCAGATGATGTCATTGCCCCAGATCTCGCGTGGGTTAATGACTTGCTGAGGTAG 996 0.4859 MSSVCPEHKFQLQLLSLEKYNRDNDTPPRKLLTQRATVYDGGHYDYDSDDDSGDPYASDEFRMYEFKVRLCMRSRSHDWTDCPFQHPGEKARRRDPRRYHYSGSVCPEFRRGNCSRGDACEFSHGVFESWLHPDRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPLDNDNNIRNQKCSIMTPHSNNNNNHGCLFCQCSSSTCSPTSTLFGVSHFSPTLSPSSPSSPTRFETDDPHESVVKDVLYDIVSSMDGLNFGEASPVSASKPRNLSWLNVSELDVSENQQQFIFSPTITAGGRFSNNGNGRYLREESGVVADDVIAPDLAWVNDLLR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01152 331 PANTHER UNKEMPT FAMILY MEMBER 36 330 IPR045234 -
Cca04g01152 331 SMART c3hfinal6 100 126 IPR000571 GO:0046872
Cca04g01152 331 SMART c3hfinal6 135 158 IPR000571 GO:0046872
Cca04g01152 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 125 IPR000571 GO:0046872
Cca04g01152 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 36 330 - -
Cca04g01152 331 Gene3D - 100 163 - -
Cca04g01152 331 ProSiteProfiles Zinc finger C3H1-type profile. 101 127 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01152 Cca-Chr4 13229040 13230536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01152 56 162 C2H2 Transcription Factor Family AT5G07500 68.224 3.57e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca04g01152 zf-CCCH 2.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01152 K23047 - gmx:100820375 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01152 04 13229040 13230536 Cca04g01152 04 13229040 13230536 ECH