Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01151 ATGACTGGCAGAGAAATTCTCCACATGATGAAGGTGAAAGCAGGATTTGGAACATCAACATCGGACACAGGGAAAGGAAAAGGGAAAATATCAAAACGCATTACACATGGCTTTCACTTGATGAAGGGAAAATCAGGGCATCCAATGGAAGATTATTTAGTTTCGGAATTTAAGCAAGAAAAGGATAGAGAATTAGGCTTGTTTGCTATATTTGATGGCCACTTGGGCCACGATGTTGCAAGCTATTTGCAGAACCACCTTTTACAAAACATCTTGAAACAGCATGACTTTTGGAGTGAGACAGAGAGCGCAGTGAAGAGAGCTTATCTTGAAACAGATGAAAATATATTGGAACAAGCACTTGAGTTAGGGAGAGGAGGGTCAACAGCTGTAACTGCAATACTGATTGATGGCCATAAGCTTGTAGTAGCAAATGTTGGAGACTCAAGAGCTGTTATTTGTGAGAATGGAAAAGCCAGACAACTATCCATAGATCATGAGCCAAGCAAGGAAAAAAAATCTATTGAGAGGCGTGGTGGTTTTGTATCAAAAATTCCAGGTAAACCACACCCTTTGGTTTTTCAGGTGTTAAAACACACAAAATACAACATGTGCATGTGTTATAATGTTGGATTTAGGTACTTATTCAACATTTTCTTAATTTTATAG 669 0.3857 MTGREILHMMKVKAGFGTSTSDTGKGKGKISKRITHGFHLMKGKSGHPMEDYLVSEFKQEKDRELGLFAIFDGHLGHDVASYLQNHLLQNILKQHDFWSETESAVKRAYLETDENILEQALELGRGGSTAVTAILIDGHKLVVANVGDSRAVICENGKARQLSIDHEPSKEKKSIERRGGFVSKIPGKPHPLVFQVLKHTKYNMCMCYNVGFRYLFNIFLIL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01151 222 ProSiteProfiles PPM-type phosphatase domain profile. 35 222 IPR001932 -
Cca04g01151 222 Gene3D - 17 206 IPR036457 -
Cca04g01151 222 SMART PP2C_4 24 222 IPR001932 -
Cca04g01151 222 PANTHER PROTEIN PHOSPHATASE 2C 1 187 IPR015655 GO:0004722|GO:0006470
Cca04g01151 222 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 187 - -
Cca04g01151 222 SUPERFAMILY PP2C-like 32 184 IPR036457 -
Cca04g01151 222 CDD PP2Cc 36 183 IPR001932 -
Cca04g01151 222 Pfam Protein phosphatase 2C 47 184 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01151 Cca-Chr4 13214867 13218267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01151 1 187 PP2C-type Phosphatase Gene Family AT2G20630 66.845 1.01e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01151 K17506 - gmx:100819846 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01151 04 13214867 13218267 Cca04g01151 04 13214867 13218267 ECH