Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01149 ATGCCCGCTCAGAAGCGTTCCTTCCCCGACACTCCTcacgatcaccaccgccacgccaagcaacaccaccaccaaccacaagaagaagaagaagaagaagaaccacaacaaaacgaaggagaagaagacgatgatgataacaaatcagatgattctcgccacgctccgtcctctccctccGAAGAAAAATCCGAATTTGTATTTGTAGAACTTCTGGAAATACGCAAAGAAGTTCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACCGATTTTGCAGGGAATGTATTGACAAGTCGATGCGACTAGGGAACAATGAATGTCCTGCTTGTCGCACACACTGTGCCAGTCGTCGTTCTTTGAGAGACGATCCAAACTATGATGCCCTAATTGCAGCTCTGTATCCGGATATTGAGAAATATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAGGCTTCAATTGCAAAAGTTGTTCAAAGACAATCTGAAGCACTGGTTAAGAGACGTACACCTGGTTCGTATCTGACAAGATCACAGCGCAATCAAAGAAATATTCTTTCTAGGAGACAAAACCAAATGATTGATAATCAAGGTTCTGAAGATAACGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAAAGGCGGACCAGAGGACGCCCTTCTCAGCCCTCATCATCGACAGCAAGTCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTCGAGAAAATCGAGGAATTTCTTCTAGACAGATGTCAAAACCGCAAAAGCTAACTTGGGGAAGGGGTGGCTTTAGGAGTCACACACGTCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGCAGTATTCGCTTGGCTAAGTTAGTTGATTATCTCCGTAACTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTGGACAAAGAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCCGTGAAGCACCTTTGTGAATATGTTGCTCGTCAGATTCCTTTGCTAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTGCAGTTTGTGACAAGTCATCTGATGAGACTTCATCCTCTGATGAGCTAACTACGCTTGTTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGTCATGAATCTTTGGCAGGGCTTAAATTAAAATCCATTTCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAGGAATGA 1368 0.383 MPAQKRSFPDTPHDHHRHAKQHHHQPQEEEEEEEPQQNEGEEDDDDNKSDDSRHAPSSPSEEKSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRTPGSYLTRSQRNQRNILSRRQNQMIDNQGSEDNEEENDNNEKDSSSTDERCTELRQRRRKRRTRGRPSQPSSSTASPDGGCIESDMDISRENRGISSRQMSKPQKLTWGRGGFRSHTRHGSGNGSNSKSSRSIRLAKLVDYLRNLNENTDELDVHLILLSLDKESTPSLQQPHLCCRPTLSVKHLCEYVARQIPLLVEEVEILAVKGCCSAVCDKSSDETSSSDELTTLVIDPSKDELETLQGHESLAGLKLKSISKREHLILAYRRKE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01149 455 PANTHER OS11G0578200 PROTEIN 12 455 IPR044592 -
Cca04g01149 455 MobiDBLite consensus disorder prediction 189 214 - -
Cca04g01149 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 12 455 - -
Cca04g01149 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 143 IPR013083 -
Cca04g01149 455 Pfam Zinc finger, C3HC4 type (RING finger) 79 119 - -
Cca04g01149 455 CDD RING-HC_RING1_like 80 120 - -
Cca04g01149 455 ProSiteProfiles Zinc finger RING-type profile. 80 120 IPR001841 -
Cca04g01149 455 MobiDBLite consensus disorder prediction 1 64 - -
Cca04g01149 455 MobiDBLite consensus disorder prediction 31 46 - -
Cca04g01149 455 SMART ring_2 80 119 IPR001841 -
Cca04g01149 455 MobiDBLite consensus disorder prediction 177 316 - -
Cca04g01149 455 Coils Coil 149 169 - -
Cca04g01149 455 MobiDBLite consensus disorder prediction 47 64 - -
Cca04g01149 455 ProSitePatterns Zinc finger RING-type signature. 96 105 IPR017907 -
Cca04g01149 455 SUPERFAMILY RING/U-box 66 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01149 Cca-Chr4 13190331 13197501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01149 73 143 C3H Transcription Factor Family AT3G23060 35.135 5.33e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01149 K10695 - gmx:100801738 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01149 04 13190331 13197501 Cca04g01149 04 13190331 13197501 ECH