Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01147 ATGGCTGATGGACCGCAGCATCCATCAGTTGCTCAGAAGCTAGCTGGACAGTCTTACCTGATGTCCAGGCTTAGCCCCAACTTCAACACCAGGAATTATTCTGCAGCTGGTTCTTACTACAATGCGGGAGTGCATTATTCTGGATTGGCTGCTGTGTTGCCTTCATCTTCAGTTACTGCACATGCTCCAGCAGAGAAAGGAGCGGGTGCTTTTTTGGTGGATTTTCTGATGGGTGGAGTGTCTGCTGCTGTGTCGAAGACAGCTGCTGCTCCAATTGAAAGAGTCAAACTCCTTATCCAAAATCAGGATGAAATGATTAAAAGTGGTCGGTTGTCTGAACCATATAAGGGAATTGGTGATTGTTTTGCCCGAACCATGAAGGATGAGGGTATAATTGCACTTTGGAGAGGCAATACTGCTAATGTTATCAGATACTTCCCTACTCAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTTTTCAACTTTAAAAAGGACAAAGATGGCTACTGGAAATGGTTTGCTGGGAATTTGGCATCTGGTGGTGCTGCTGGGGCTTCTTCCCTGTTATTTGTCTATTCTTTGGATTATGCCCGTACTCGTTTAGCAAATGATGCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTTAATGGCATGATTGATGTTTACAAGAAAACCATCCAGTCTGATGGCATTGCTGGCCTATATCGTGGATTCAACATCTCATGTGTTGGAATCATAGTGTATCGCGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTTTTGGTCGGTGGATTGCAGGATAGTTTCTTTGCTAGTTTCCTTTTGGGATGGGGAATCACAATTGGTGCTGGTTTGGCTTCGTATCCCATTGATACTGTGCGTAGAAGGATGATGATGACTTCTGGAGAAGCTGTGAAGTACAAGAGTTCTTTGCATGCTTTCCAAACAATCGTCGCAAAAGAGGGTACCAAGTCACTCTTCAAAGGTGCTGGTGCAAACATATTACGTGCTGTAGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAGCTACAGCTCGTTTTGTTTGGAAAGAAATACGGATCTGGTGGAGGCGGCTAA 1119 0.4468 MADGPQHPSVAQKLAGQSYLMSRLSPNFNTRNYSAAGSYYNAGVHYSGLAAVLPSSSVTAHAPAEKGAGAFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFARTMKDEGIIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGMIDVYKKTIQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGLQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLVLFGKKYGSGGGG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01147 372 PRINTS Mitochondrial carrier protein signature 74 87 IPR002067 GO:0055085
Cca04g01147 372 PRINTS Mitochondrial carrier protein signature 87 101 IPR002067 GO:0055085
Cca04g01147 372 PRINTS Mitochondrial carrier protein signature 137 157 IPR002067 GO:0055085
Cca04g01147 372 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Cca04g01147 372 PRINTS Mitochondrial carrier protein signature 239 257 IPR002067 GO:0055085
Cca04g01147 372 PRINTS Mitochondrial carrier protein signature 283 305 IPR002067 GO:0055085
Cca04g01147 372 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-RELATED 6 371 - -
Cca04g01147 372 Pfam Mitochondrial carrier protein 275 362 IPR018108 -
Cca04g01147 372 Pfam Mitochondrial carrier protein 71 166 IPR018108 -
Cca04g01147 372 Pfam Mitochondrial carrier protein 173 266 IPR018108 -
Cca04g01147 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 162 IPR018108 -
Cca04g01147 372 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 6 371 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01147 372 SUPERFAMILY Mitochondrial carrier 71 356 IPR023395 -
Cca04g01147 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 266 IPR018108 -
Cca04g01147 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 274 360 IPR018108 -
Cca04g01147 372 Gene3D Mitochondrial carrier domain 72 367 IPR023395 -
Cca04g01147 372 PRINTS Adenine nucleotide translocator signature 71 83 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01147 372 PRINTS Adenine nucleotide translocator signature 115 136 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01147 372 PRINTS Adenine nucleotide translocator signature 148 160 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01147 372 PRINTS Adenine nucleotide translocator signature 174 187 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca04g01147 372 PRINTS Adenine nucleotide translocator signature 279 295 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01147 Cca-Chr4 13158863 13162298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01147 3 362 Antiporters AT4G28390 81.892 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01147 K05863 - gmx:100802974 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01147 04 13158863 13162298 Cca04g01147 04 13158863 13162298 ECH