Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01146 ATGGCTTCATCTTCATCATCTTATTCCTCCACCACTTGTGTGTTATTCCTCCTTTTCCTCCACTTATCATGTTTCACAAacaacctcaatgcaaagcacagcaaggccaacaacagtcacaagcaccaccacaCTCAAAACCCTCCCTTAAACCCAAGGCTCCACATGGCCTTTCTTGGCCTCCAAGCATGGAAGCATGTGATCTATTCGGACCCAAATAACTTCACTTCCAACTGGGTAGGCCCTTCAGTTTGCAACTACACAGGAGTGTACTGTGCCCCCTCACTTGATGACCCTAAAGTCACAGTTGTGGCTGGCATTGACCTTAACTTTGGGGACATAGCAGGGTTCCTACCCGATGAAATAGGCCTTCTCTCTGACCTTGCTATCCTTCACCTCAGCAACAACCGTTTCTGTGGCATCCTACCAATGTCCTTAACCAATCTCACACTACTCTATGAGCTTGATCTTAGCAGCAACAGGTTTGTAGGACCCTTTCCTTTGGTTGTTCTCTCCCTTCCCATGCTCAACTACCTTGACCTCCGGTTCAATGAATTTGAAGGGCCATTGCCTCCTCAACTCGTCAACAAAACCTTTGATGCCATTTTCGTAAACAGCAACCGTTTCACAAGTTCCATTCCACCAAACTTGGGAAAAATCTCAGCTTCTGTTCTAGTCTTTGCCAACAACAAATTTGGAGGGTGTCTCCCAGAGAGCATAGTGAATTTGGCTGACACTTTGGAGGAGCTTGTGCTGATCAACACAAGCTTGTCAGGATGTTTACCACAGCAAGTAGGGTTTCTATACAAATTAAGAGTGTTGGATGTGAGTTTCAACGACATTGTGGGCCCCATACCTTATAGCCTTGCAGGGTTGTCTCACTTGGAGCAACTAAATTTAGGGCACAACATGATGAGTGGCATAGTCCCTATGGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATCTGTAAGAACTTGACATCAAAGAGAATAGTGTTTGATGACAGAAGGAACTGTTTGCCTGAGAAGCCACTTCAGAGGAGCCAGAAGGAATGTGAGGCCAAACTTGAACACCCTGTTGAGTGTTCTGAGCTTTGTTGTGTTGTTGGGAGCAATGTGTCTTCTGGTTCTGTGGCTGTTCCACCTGCTGCTGCAATGCCTGTGGCTGCACCTCTTCTTGCACCAACACCAAGCTACCCTTGA 1242 0.442 MASSSSSYSSTTCVLFLLFLHLSCFTNNLNAKHSKANNSHKHHHTQNPPLNPRLHMAFLGLQAWKHVIYSDPNNFTSNWVGPSVCNYTGVYCAPSLDDPKVTVVAGIDLNFGDIAGFLPDEIGLLSDLAILHLSNNRFCGILPMSLTNLTLLYELDLSSNRFVGPFPLVVLSLPMLNYLDLRFNEFEGPLPPQLVNKTFDAIFVNSNRFTSSIPPNLGKISASVLVFANNKFGGCLPESIVNLADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNDIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCELPNLANFTFSYNFFCEEEGICKNLTSKRIVFDDRRNCLPEKPLQRSQKECEAKLEHPVECSELCCVVGSNVSSGSVAVPPAAAMPVAAPLLAPTPSYP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01146 413 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 408 - -
Cca04g01146 413 Gene3D Ribonuclease Inhibitor 223 365 IPR032675 -
Cca04g01146 413 SUPERFAMILY L domain-like 63 341 - -
Cca04g01146 413 Gene3D Ribonuclease Inhibitor 59 222 IPR032675 -
Cca04g01146 413 PANTHER EXTENSIN-LIKE PROTEIN 1 408 - -
Cca04g01146 413 Pfam Leucine rich repeat 270 327 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01146 Cca-Chr4 13153718 13155169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01146 51 380 Leucine-rich Repeat extension Gene Families AT3G24480 54.079 7.27e-131 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01146 - - gmx:100782629 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01146 04 13153718 13155169 Cca04g01146 04 13153718 13155169 ECH