Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01143 ATGTCACTGCAAGCTCTGAAGGAATCTCTGCGACGTTGCTCAACCCAAAATCCCtcttccttttcttcttcttcttcttcttcAATTTCCCAAACACTAACAGACCCCAATTCAATTCTTCGCGACAGCGATTCCCTCTTCCCAATCCCTAGAAAACCCCCTAAATCCTCTCTCTCCCACCAGCTTCGCCGTCTTTACGAATCCCCTCTTCAACCCCACAACCCACTTACCCAAACACACTCCAAAACCCTACAAAAACCagaagaagaagaagaagaagaagagattaagagaaAGCAATTCGCTTCACCCAAATTGCCACACTTTCAAATTGATCACACCGGACCCTTTGAGCCTCTGCTGCTGTCTTCACAAGGACAACTTCCTGTGGTTCAGGTTCCTGCATCTATAAATTGTAGACTGCTTGAGCATCAAAGAGAGGGGGTGAAGTTTTTGTATGGTTTGTACAAAAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTCGGAAAGACCATTCAAGCAATAGCATTTCTAGCTGCCATCTTTGGTAAAGAAGGACATTCTACTCTAAAGGAAAACTGGGAAGTGAAAAGAGAGCCTGCATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATTTGATACATGATAAATTGAGAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCCTTGTCAGATGTCAACTGGAAAATTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGTTATGGTCTCACCGGGACTATAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTGCTCCTGGATCCCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCACTTAAGCAAGGCCAGAGATCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGACAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATCGTATTTTGTGCAATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGACGACCCCGACAAACAAAGTAAAGATGCGGAGTTTGCAGCTGCTGTGTTTGGCCCTGATATTGATTTAGTGGGTGGAAACACACAAAATGAAAGTTTCATGGGTCTCAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTATTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCCGTAAGGATGCTGGACATACTAGAGAAATTTCTAATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTGTTCGTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTATGGACAGAAACGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCTCTTGAAGAACTTGTTTACACACGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAGTTTCAAGGAGAGCTTTTCGGGATTTCCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCATTGAATTGCATAAAGAACAATGGCATGAAACAGAACAACCGGAAAAAGTAAATCTGTCAGAAGAAACAGGTTCATCGGTATCAGAGTCAGAAACCAGATTATGTGATAAATCTACAAGGGCTGAATCAAGTAAACCAGATCTTGAAGACCTTGGCATTGTCTATGCTCATCGCAATGAAGACATTGTCAACTTCGGACCTGGGATTCAAGGGAAAATAGATACCAGCATCCCTTCAAATGATACTCTAGTCAAGCCAAGCATCTCTTTGGACCACCAAAGAAAAAAAAGACACAAAGTTCCTTTGATTGATGAAAGGAAGAGAGGCCAATATAGGCTCCTTGCTCAGTCTATGGGCATGGGAGAGCTTGCTTTTAGCAAATGGTTACTATCAGCGACACCACTTGAGAGAGAAAAAGTGCTTCTTGACTACAAGAAGAAAAAAAAAGATACCTAA 2610 0.4092 MSLQALKESLRRCSTQNPSSFSSSSSSSISQTLTDPNSILRDSDSLFPIPRKPPKSSLSHQLRRLYESPLQPHNPLTQTHSKTLQKPEEEEEEEEIKRKQFASPKLPHFQIDHTGPFEPLLLSSQGQLPVVQVPASINCRLLEHQREGVKFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKEGHSTLKENWEVKREPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIHDKLRANGVEILITSFDTYRIHGSSLSDVNWKIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKQGQRSTAPDRFVQIANKRKQHLVTVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFVISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQKRHVVVFRLLAAGSLEELVYTRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEQWHETEQPEKVNLSEETGSSVSESETRLCDKSTRAESSKPDLEDLGIVYAHRNEDIVNFGPGIQGKIDTSIPSNDTLVKPSISLDHQRKKRHKVPLIDERKRGQYRLLAQSMGMGELAFSKWLLSATPLEREKVLLDYKKKKKDT 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01143 869 Gene3D - 119 373 IPR038718 -
Cca04g01143 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 697 IPR027417 -
Cca04g01143 869 MobiDBLite consensus disorder prediction 729 761 - -
Cca04g01143 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 374 IPR027417 -
Cca04g01143 869 Pfam Helicase conserved C-terminal domain 530 642 IPR001650 -
Cca04g01143 869 PANTHER SNF2/RAD54 FAMILY MEMBER 27 857 - -
Cca04g01143 869 SMART helicmild6 559 642 IPR001650 -
Cca04g01143 869 MobiDBLite consensus disorder prediction 736 750 - -
Cca04g01143 869 CDD SF2_C_SNF 524 653 - -
Cca04g01143 869 SMART ultradead3 137 332 IPR014001 -
Cca04g01143 869 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 686 IPR001650 -
Cca04g01143 869 MobiDBLite consensus disorder prediction 1 105 - -
Cca04g01143 869 MobiDBLite consensus disorder prediction 1 41 - -
Cca04g01143 869 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 27 857 - -
Cca04g01143 869 Pfam SNF2-related domain 156 414 IPR000330 GO:0005524|GO:0140658
Cca04g01143 869 MobiDBLite consensus disorder prediction 83 102 - -
Cca04g01143 869 Gene3D - 386 741 IPR027417 -
Cca04g01143 869 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 324 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01143 Cca-Chr4 13117568 13124730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01143 531 672 RAD5 or RAD16-like Gene Family AT5G43530 38.732 2.29e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca04g01143 SNF2_N 1.4e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01143 K20098 - gmx:100781003 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01143 04 13117568 13124730 Cca04g01143 04 13117568 13124730 ECH