Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01142 ATGGCTGGTACGAGTCGCAGGTTTGGTGTGGGCGTGTTGGTTTCGATGATTCCTATGATGATGCTTCTTGCTTCTCAAGCTGTGGCCAGGGAATATGTTGTTGGTGGCAAAGATGGGTGGGTGGTGAAACCTTCCGAAGACTATGGTCATTGGGCTCAAAGAAACAGATTTCAAGTCAATGACACTCTTCATTTCAGGTACAACAAAGGAAGCGATTCGGTGGTGGTGGTGAAGAAGGAGGATTTCGATTCATGCAACGCCAACAACCCAATTCAGAAAATGGACGATGGCGATTCAATCTTCCAATTTCCCAACTCGGGTCTCTTCTACTTCATAAGTGGCAACCCCGACAACTGCAAAAACGGCCAAAAACTCATCGTTTTAGTCATGGCCATCAGAAACCTCCCTCCACGcgccgccgccccgccgccccttccgccgcagaaggttccggcctccgccctggccgctccggcgccgcctccCACCGACAAATCGGCCTCCGGAAgggttggtgtgagtgttgtcggtttggtgttcactgcctttgttggtttggtttggtttatttag 573 0.3647 MAGTSRRFGVGVLVSMIPMMMLLASQAVAREYVVGGKDGWVVKPSEDYGHWAQRNRFQVNDTLHFRYNKGSDSVVVVKKEDFDSCNANNPIQKMDDGDSIFQFPNSGLFYFISGNPDNCKNGQKLIVLVMAIRNLPPRAAAPPPLPPQKVPASALAAPAPPPTDKSASGRVGVSVVGLVFTAFVGLVWFI 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01142 190 SUPERFAMILY Cupredoxins 29 130 IPR008972 -
Cca04g01142 190 Pfam Plastocyanin-like domain 40 123 IPR003245 GO:0009055
Cca04g01142 190 Gene3D - 28 133 IPR008972 -
Cca04g01142 190 PANTHER EARLY NODULIN-LIKE PROTEIN 2 17 147 - -
Cca04g01142 190 CDD OsENODL1_like 30 130 IPR041846 -
Cca04g01142 190 MobiDBLite consensus disorder prediction 140 169 - -
Cca04g01142 190 PANTHER BLUE COPPER PROTEIN 17 147 IPR039391 GO:0009055
Cca04g01142 190 ProSiteProfiles Phytocyanin domain profile. 30 131 IPR003245 GO:0009055
Cca04g01142 190 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01142 Cca-Chr4 13106754 13108571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01142 3 162 Phytocyanin Superfamily AT4G28365 44.444 1.05e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01142 - - gmx:100778867 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01142 04 13106754 13108571 Cca04g01142 04 13106754 13108571 ECH