Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01138 ATGGCTTCTGGTGGAACAACATCAAGCAGGAAGAGGCGAAGCACAGAGATAAAGGAAGTGAAACAGAAAAACAAGCGTCACGCGACTTTCTGCAAACGCAAACAAGGGCTTTTCAACAAACTCACCGAACTCTCTCTTCTTTGCGACGTGAAAACCGCATTGATCATTATCTCTCCAAGCGACATGCTCTATTCTTGCGGCTATCCCGACGCCGACGCTGTTCTTCGCCGCTATCTCGGCGTCGGAGGAAGCCTCCAAAGAAACCACTGTGTCAAGACCCACGCAAGGGCATGTGTTGGAGGAGACTTGGAGTGTGCATGCAAAACGAATGAGAAAGAGAGAATAGAATGTGAAAGCCTAAGGGTGGAGTACGAGGCCACTCAAAATCTGTTGAAAGCAGAGACAAAGCGTCTTCAAGCGATGACGAAGGCACAAACTGATTCGTGCTTTGATCCTTGGTGGAATCTCCCCACAGAGGGTATGAGTTTGGAGAGTCTCCAAACTTTCAAAGCTTCCTTGGAGAGTTTGAAGCTTAACCTTGTTGCTGCGGTACAAGAGAAGCAGTTATTTACTTCGGTTTCACCAACGTCACATGTTCTTGTTCCGCCACCACAATTACCAAACATGTCATAG 633 0.4755 MASGGTTSSRKRRSTEIKEVKQKNKRHATFCKRKQGLFNKLTELSLLCDVKTALIIISPSDMLYSCGYPDADAVLRRYLGVGGSLQRNHCVKTHARACVGGDLECACKTNEKERIECESLRVEYEATQNLLKAETKRLQAMTKAQTDSCFDPWWNLPTEGMSLESLQTFKASLESLKLNLVAAVQEKQLFTSVSPTSHVLVPPPQLPNMS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01138 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 65 IPR002100 GO:0003677|GO:0046983
Cca04g01138 210 MobiDBLite consensus disorder prediction 1 21 - -
Cca04g01138 210 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 191 - -
Cca04g01138 210 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Cca04g01138 210 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Cca04g01138 210 PANTHER MADS BOX PROTEIN 9 191 - -
Cca04g01138 210 Coils Coil 110 137 - -
Cca04g01138 210 Gene3D - 22 97 IPR036879 GO:0003677|GO:0046983
Cca04g01138 210 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Cca04g01138 210 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Cca04g01138 210 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Cca04g01138 210 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01138 Cca-Chr4 13057352 13059230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01138 9 199 Type I MADS-box Gene Family AT5G60440 27.835 1.91e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca04g01138 SRF-TF 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01138 - - ccaj:109816862 412.149