Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01132 ATGTCTTCCTTTCTCATCTCTTTCCTTCTCCTCATCCTTCTAAACTCAGTTTCATCCACAGAGTTCATTTACAACACCAGCTTCAACTCCACCAACACCCTTCTCCACGGCAACGCCACCACTGAATCTTCCATTCTCACCCTCACCAACCGTTCCACCTTCTCTGTGGGCCGTGCCTTTTACCCCTTCAAGATTCCCACAAAGCCTCCCAACTCCTCAACCCCTTTACCATTCTCAACCTCCTTCATTTTCTCCATTGCTCCATTCGAGGACCTTCTCCCTGGCCATGGCTTTGTCTTCATATTGTCACCTTCTGCAGGCGCCACTGGGGTGAGTTCTGCTCAGCATCTTGGCCTCTTCAACCTGACCAACAATGGTGATCCCAACAACCATGTGTTTGGCGTTGAGTTTGATGTGTTTGACAACCAAGAGTTCAATGACGTCAATGACAATCATGTGGGGGTGGACATAAACTCTCTCACTTCTTTCACTTCCCATGCAGCTGGGTTATGGGGTGGGGAGGGTAGTGACAAGTTTGAGGATTTGAAGCTTAATGGTGGTGAGAATTATCAGGTGTGGATTGATTATTTGGATTCTAGAGTTAATGTCACGATGGCCCTTGCAGGCCAAAAAAGGCCTCAGAAGCCCTTGATTAGTGAGCCTGTGGATCTTTCTGAAGTTCTCTTGGATGAAATGTATGTTGGATTTTGTGGGGCCACAGGGCAGCTTGTGGAGAGTCATAAGATTTTGGCTTGGAGCTTTAGTAACTCTAATTTTTCCATTGGTGATGCTTTGGTGACTAGAAACTTGCCTTCATTTGTGATTTCCAAAGAATCTGTTTTGAGGTCAAAGGGTTTTATTGTAGGGATTACTGCAGGTGTTTTCTTTGTCATTGGTGGTGCTGTTGTGATACTTGTGCTGTTTATGAGAAGAAAAAGGAGCAAAAGAAAGGAGGGAGAAGTGGACATTGAAGATTGGGAGCTAGAGTATTGGCCACACCGTGTTAGGTATGAAGATATTTATGCTGCAACTAAAGGATTTTCAGACCAAAATGTAATTGGCTTTGGAGGAAATGGGAAAGTCTATAAAGGGATTCTGCAAGGAGTACAAGTTGCGGTGAAAAGAATTCCTTGTGACAGTGAACATAGAATGAGAGAGTTTTTGTCTGAGGTTTCAAGTTTAGGCAGGTTGAAGCATAGGAATGTGGTGCCATTGAGAGGTTGGTGTAAGAAAGAGAGAGGGAGCTTGATATTAATCTATGACTACATGGATAATGGAAGTTTTGATAAAAGGATATTTAATGGTGATGAGAACGCAATCTTTGGGTGGAATGATAGAGTCAAGGTGCTGAAGGATGTGGCTCAAGGAATATTGTATTTGCATGAGGGTTGGGAGGTTAAGGTGTTGCATAGAGACATCAAGGCAAGCAATGTGTTACTTGACAAGGATATGAATGCAAGGTTGGGGGATTTTGGACTAGCCAGAATGCATCATCATGAGCAGATTGCTGCTCATACCTCACAAGTGGTTGGAACTGTTGGCTTCATGGCACCTGAACTCATTCACTCTGGGAGAGCCTCAACTCAAACTGATGTGTTCAGTTTTGGTGTGTTGGTTTTAGAGGTGTTGAGTGGGAGAAGGCCAAATGAACAAAATAAACCAGCATTGGTTAGTTGGTTAAGGAGACTAGTTGAGAGAGGAGAGGAGTGTTCTGCTCTTGATGAAAGACTAAAAGGGAGGGGTGAATATAGCACAGATGAGGTTGAGAGAGTGCTTCATCTTGGTTTGTTGTGCACTCATCATGACCCTCATGTTAGGCCAAGTATGCGACAGGTTGTGAAGGTGCTGGAGGGAGAGAGTTTAGATAGGAGCTTGCTTGACAGAATAAATTCAGCAGCTGGATATGCTGGGAGCTTTGATTGCAGCATTCACCCCACTATGGATGAAATTTTTTCCTCTCACTGTTCTTTGACAACTCCTTGTAGCAATGAGAGCAAATGA 2001 0.4403 MSSFLISFLLLILLNSVSSTEFIYNTSFNSTNTLLHGNATTESSILTLTNRSTFSVGRAFYPFKIPTKPPNSSTPLPFSTSFIFSIAPFEDLLPGHGFVFILSPSAGATGVSSAQHLGLFNLTNNGDPNNHVFGVEFDVFDNQEFNDVNDNHVGVDINSLTSFTSHAAGLWGGEGSDKFEDLKLNGGENYQVWIDYLDSRVNVTMALAGQKRPQKPLISEPVDLSEVLLDEMYVGFCGATGQLVESHKILAWSFSNSNFSIGDALVTRNLPSFVISKESVLRSKGFIVGITAGVFFVIGGAVVILVLFMRRKRSKRKEGEVDIEDWELEYWPHRVRYEDIYAATKGFSDQNVIGFGGNGKVYKGILQGVQVAVKRIPCDSEHRMREFLSEVSSLGRLKHRNVVPLRGWCKKERGSLILIYDYMDNGSFDKRIFNGDENAIFGWNDRVKVLKDVAQGILYLHEGWEVKVLHRDIKASNVLLDKDMNARLGDFGLARMHHHEQIAAHTSQVVGTVGFMAPELIHSGRASTQTDVFSFGVLVLEVLSGRRPNEQNKPALVSWLRRLVERGEECSALDERLKGRGEYSTDEVERVLHLGLLCTHHDPHVRPSMRQVVKVLEGESLDRSLLDRINSAAGYAGSFDCSIHPTMDEIFSSHCSLTTPCSNESK 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01132 666 PANTHER - 7 622 - -
Cca04g01132 666 Gene3D - 18 267 - -
Cca04g01132 666 ProSitePatterns Protein kinases ATP-binding region signature. 353 374 IPR017441 GO:0005524
Cca04g01132 666 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 7 622 - -
Cca04g01132 666 CDD STKc_IRAK 353 618 - -
Cca04g01132 666 Pfam Protein kinase domain 348 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01132 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cca04g01132 666 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01132 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 259 IPR013320 -
Cca04g01132 666 Pfam Legume lectin domain 20 258 IPR001220 GO:0030246
Cca04g01132 666 Gene3D Transferase(Phosphotransferase) domain 1 423 629 - -
Cca04g01132 666 SMART serkin_6 347 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01132 666 SUPERFAMILY Protein kinase-like (PK-like) 328 619 IPR011009 -
Cca04g01132 666 CDD lectin_legume_LecRK_Arcelin_ConA 20 257 IPR001220 GO:0030246
Cca04g01132 666 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01132 Cca-Chr4 12929778 12931893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01132 15 567 Receptor kinase-like Gene Family AT4G04960 59.140 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca04g01132 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01132 - - gmx:100807059 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00877 10 10013180 10015626 Cca04g01132 04 12929778 12931893 PCT
Cca04g01132 04 12929778 12931893 Cca10g00875 10 10006723 10007918 PCT