Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01131 ATGATTAATTTGATGATGGCATGTCATTCTATTATGCAGATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGGGATGTGATTAACCAAAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGTTTGACCATCCAAACATAATAAAATTGGAGGGCTTGATAACATCACAGATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGATATCAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCACGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGATAATAATGGACTCTTAAAGATTGCCGATTTTGGTTTGGCGAATTTTTTTGACCCCCACCAGAGTGTTCCGTTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGTGAATTGTATACTGGAAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCACCATCTGATGACTATTGGCTTAAATTGCGCTTGTCACATTCAACAGTATTCAGGCCCCCACACCATTATAGGCGATGTATTTCAGATACATTTAAGGACTACCCATCTACTGCAGTAAAGCTCATAGAGACCCTTCTTTCTGTAGAGCCAGCACATCGAGGGACTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAGCCTCTGCCTTGTGATCCATCAACTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCAAGAAGGCAAGGAGCTGTTGGAGGTAGGGAGCAAAAAGTTGCCTCAGGAGTTAGACAAGATAGAGGACACAGGGCCAATGTCACAGCAAAAGACAATGCTGACCCAGGCTTATCAGTAAAGCAAGGACGTTATACCAGCTCAAAGAACCGAAGTGAATTATCCAACCCTCATAGGGGATCGGTGTCTGGGATTCTGGTTTTCCCTCACAAACAGTCAGAAGATAGTAAAGAAATGGAAAATAATTTATCTGGGCATATTTATAAGAGGCCTTCACATTCTGGCCCATTGGTTCCCGGTTCTGTCTGGGCAAAAGGTGGAAAGGAAGTTGATGACATGCCTCCTGTTTCTAACAAAGGGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACATTGTTGTCTGAAGATCAGGAGGATAAAACAGTTCACTTGCACCACAGAAAACCAATAGAAGTAAGAAAATCAGTGGAGTCAACTAATGGATCTGAGTCAAGAAGGCGGCAGGATCAGAAACGGATTGTTGATTACAATCAAATTGAAAGTAGAAGGATCCCGACGGAAAAATCAACTCCGGGCGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGAGCATGAGAGAAAGATCCAAGAGCTTTCAAGACGAGCGAGAATTGACAAGTCAAGAGCAAGAGGTGAGAAAGTTCGAGCACGGCGGAAGTAG 1716 0.4336 MINLMMACHSIMQIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMAREIHVLRRFDHPNIIKLEGLITSQMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGLLKIADFGLANFFDPHQSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKLRLSHSTVFRPPHHYRRCISDTFKDYPSTAVKLIETLLSVEPAHRGTAAAALKSEFFTSEPLPCDPSTLPKYPPSKEIDAKLRDEARRQGAVGGREQKVASGVRQDRGHRANVTAKDNADPGLSVKQGRYTSSKNRSELSNPHRGSVSGILVFPHKQSEDSKEMENNLSGHIYKRPSHSGPLVPGSVWAKGGKEVDDMPPVSNKGNLSKLSGLVASRTLLSEDQEDKTVHLHHRKPIEVRKSVESTNGSESRRRQDQKRIVDYNQIESRRIPTEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHERKIQELSRRARIDKSRARGEKVRARRK 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01131 571 PANTHER CELL DIVISION PROTEIN KINASE 12 557 - -
Cca04g01131 571 Gene3D Transferase(Phosphotransferase) domain 1 91 330 - -
Cca04g01131 571 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Cca04g01131 571 MobiDBLite consensus disorder prediction 321 383 - -
Cca04g01131 571 ProSiteProfiles Protein kinase domain profile. 8 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01131 571 PANTHER CYCLIN-DEPENDENT KINASE 12 557 - -
Cca04g01131 571 MobiDBLite consensus disorder prediction 472 504 - -
Cca04g01131 571 Pfam Protein kinase domain 10 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01131 571 MobiDBLite consensus disorder prediction 335 349 - -
Cca04g01131 571 MobiDBLite consensus disorder prediction 360 379 - -
Cca04g01131 571 SMART serkin_6 8 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01131 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cca04g01131 571 MobiDBLite consensus disorder prediction 547 571 - -
Cca04g01131 571 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Cca04g01131 571 CDD STKc_CDK9_like 11 292 - -
Cca04g01131 571 MobiDBLite consensus disorder prediction 472 522 - -
Cca04g01131 571 Coils Coil 533 560 - -
Cca04g01131 571 Gene3D Phosphorylase Kinase; domain 1 4 90 - -
Cca04g01131 571 MobiDBLite consensus disorder prediction 547 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01131 Cca-Chr4 12920125 12926693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01131 11 334 Core Cell Cycle Gene Families AT5G10270 46.765 6.93e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca04g01131 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01131 - - gmx:100807590 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01131 04 12920125 12926693 Cca04g01131 04 12920125 12926693 ECH
Cca10g00873 10 9994415 10001035 Cca04g01131 04 12920125 12926693 PCT