Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01122 | ATGGCCTTAGATCACATGGAGGAGATTGTGCCCCAAAAGGAAAATTTGAAATCTTCCAGCGATATCATTGCAGAGCCTGATAGAAATGCCTCTGGTGGCTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTATATTGTTGGCCCTGCATATACAAATGGCTTCATTTTCAAAGTACCTCTTTGGAAAATGAAGAGCAACAGAAGCCACTATGTCCTGTATGCAAATCAGAAGTTACTCAATCCTCCCTTGTTCCATTATATGGCCGTGGCCAAACCACAGTACCTTCTGAAGGGAAGCCACATCAAGTAGGGACTGTCATACCCCAAAGACCTCATGGTCCCAGATCATTTAACACTGAAAGGGTTTACCAACCTATTTCTCAAAGTTATCATCCCTATAATCCTTATCATTCTCCACAATTCAACTCAATTCCAAGCGGTTATACTTATACCTCACCAATGCTTAGCACAGGTGGTTCACTAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCTAGAGTCTTTGGAAACCAGGTGGCAAACATACATACATATGCTAATTCATATAATCTTTCAGGGATCAGTAACCCAAGGATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAACAGAATAAGTTTTTTCCTCCTTTGCTGCCTAGTTTTGTGTCTTCTATTGTTTTGA | 723 | 0.408 | MALDHMEEIVPQKENLKSSSDIIAEPDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLENEEQQKPLCPVCKSEVTQSSLVPLYGRGQTTVPSEGKPHQVGTVIPQRPHGPRSFNTERVYQPISQSYHPYNPYHSPQFNSIPSGYTYTSPMLSTGGSLDNTFGIFGEMIYARVFGNQVANIHTYANSYNLSGISNPRMRRHLMQVDKSLNRISFFLLCCLVLCLLLF | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01122 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 98 | IPR013083 | - | |
Cca04g01122 | 240 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 13 | 240 | - | - | |
Cca04g01122 | 240 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 13 | 240 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cca04g01122 | 240 | SUPERFAMILY | RING/U-box | 33 | 97 | - | - | |
Cca04g01122 | 240 | SMART | ring_2 | 36 | 84 | IPR001841 | - | |
Cca04g01122 | 240 | CDD | RING-HC_AtRMA_like | 34 | 86 | - | - | |
Cca04g01122 | 240 | Pfam | Zinc finger, C3HC4 type (RING finger) | 36 | 84 | IPR018957 | GO:0046872 | |
Cca04g01122 | 240 | ProSitePatterns | Zinc finger RING-type signature. | 51 | 60 | IPR017907 | - | |
Cca04g01122 | 240 | ProSiteProfiles | Zinc finger RING-type profile. | 36 | 85 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01122 | Cca-Chr4 | 12720847 | 12724649 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01122 | 29 | 240 | C3H Transcription Factor Family | AT4G28270 | 38.249 | 1.69e-46 | 151 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01122 | K10666 | - | gmx:100786373 | 396.741 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g01122 | 04 | 12720847 | 12724649 | Cca04g01122 | 04 | 12720847 | 12724649 | ECH |