Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01122 ATGGCCTTAGATCACATGGAGGAGATTGTGCCCCAAAAGGAAAATTTGAAATCTTCCAGCGATATCATTGCAGAGCCTGATAGAAATGCCTCTGGTGGCTTTGACTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTATATTGTTGGCCCTGCATATACAAATGGCTTCATTTTCAAAGTACCTCTTTGGAAAATGAAGAGCAACAGAAGCCACTATGTCCTGTATGCAAATCAGAAGTTACTCAATCCTCCCTTGTTCCATTATATGGCCGTGGCCAAACCACAGTACCTTCTGAAGGGAAGCCACATCAAGTAGGGACTGTCATACCCCAAAGACCTCATGGTCCCAGATCATTTAACACTGAAAGGGTTTACCAACCTATTTCTCAAAGTTATCATCCCTATAATCCTTATCATTCTCCACAATTCAACTCAATTCCAAGCGGTTATACTTATACCTCACCAATGCTTAGCACAGGTGGTTCACTAGACAACACATTTGGAATCTTTGGTGAGATGATATATGCTAGAGTCTTTGGAAACCAGGTGGCAAACATACATACATATGCTAATTCATATAATCTTTCAGGGATCAGTAACCCAAGGATGAGAAGACATTTAATGCAAGTTGATAAATCACTCAACAGAATAAGTTTTTTCCTCCTTTGCTGCCTAGTTTTGTGTCTTCTATTGTTTTGA 723 0.408 MALDHMEEIVPQKENLKSSSDIIAEPDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLENEEQQKPLCPVCKSEVTQSSLVPLYGRGQTTVPSEGKPHQVGTVIPQRPHGPRSFNTERVYQPISQSYHPYNPYHSPQFNSIPSGYTYTSPMLSTGGSLDNTFGIFGEMIYARVFGNQVANIHTYANSYNLSGISNPRMRRHLMQVDKSLNRISFFLLCCLVLCLLLF 240
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01122 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 98 IPR013083 -
Cca04g01122 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 13 240 - -
Cca04g01122 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca04g01122 240 SUPERFAMILY RING/U-box 33 97 - -
Cca04g01122 240 SMART ring_2 36 84 IPR001841 -
Cca04g01122 240 CDD RING-HC_AtRMA_like 34 86 - -
Cca04g01122 240 Pfam Zinc finger, C3HC4 type (RING finger) 36 84 IPR018957 GO:0046872
Cca04g01122 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Cca04g01122 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca04g01122 Cca-Chr4 12720847 12724649 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01122 29 240 C3H Transcription Factor Family AT4G28270 38.249 1.69e-46 151
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01122 K10666 - gmx:100786373 396.741
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01122 04 12720847 12724649 Cca04g01122 04 12720847 12724649 ECH