Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01117 ATGCAGCTCCACCGTGCCTCCGCCGCCTCCAAACTGACCCTCGCCTGCTTCAGCCTCGCCTTCAAACTCGTGCTTTTGTACGCCGCCCAGGGACAACCTCAGCACCGTGGCCCAGACCTGCATTGGTACCCCGGAACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGTACGTTGGTGGATGTGAAGCCGTTCAGGGCGCGGGTGGGAGCGGTGGGACCCTTGTTGTTCATGAAAGGGGAAGGGTGTGGTGCGTGCTACAAAGTGAAGTGTTTGGACAAGAGCATATGTTCGAGAAGAGCAGTGACAGTCATTATCACGGACGAGTGTCCCGGTTGCCCCTCTGACCAAACACACTTCGATCTCAGTGGTGCCGCGTTTGGCCGCATGGCCATAGCTGGAGAAAACGGTCCACTCAGAGACCGTGGCCAAATCCCTGTCATTTACCGAAGAACTCCGTGTAAATATCCAGGAAGAAAAATTGCCTTTCATGTTAACGAAGGCTCCACACCGTTTTGGCTATCGCTTTTGGTTGAGTTTGAGGACGCAGAGGGAGATATCGGCTCCATGCATATACGAGAAGCAGGGTCTACGGAGTGGCTGCAGATGAATCACCTATGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGACCATTCTCTGTGAAGTTGAGTTCTTCCTCTGGGAGGAGCCTCTCTGCAAGAGATGTTATTCCGAGCAATTGGGTTCCAAAGGCAACTTACACCTCTCGCCTAAACTTCTACCCCTAG 804 0.5473 MQLHRASAASKLTLACFSLAFKLVLLYAAQGQPQHRGPDLHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPFRARVGAVGPLLFMKGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREAGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSSGRSLSARDVIPSNWVPKATYTSRLNFYP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01117 267 PANTHER EXPANSIN-B3 7 267 - -
Cca04g01117 267 Pfam Expansin C-terminal domain 170 250 IPR007117 -
Cca04g01117 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Cca04g01117 267 Gene3D - 164 262 IPR036749 -
Cca04g01117 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Cca04g01117 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Cca04g01117 267 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Cca04g01117 267 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Cca04g01117 267 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Cca04g01117 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Cca04g01117 267 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Cca04g01117 267 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Cca04g01117 267 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Cca04g01117 267 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Cca04g01117 267 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Cca04g01117 267 SMART dpbb_1 78 158 IPR007112 -
Cca04g01117 267 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Cca04g01117 267 PANTHER EXPANSIN-LIKE PROTEIN B1 7 267 - -
Cca04g01117 267 Pfam Lytic transglycolase 83 157 IPR009009 -
Cca04g01117 267 SUPERFAMILY Barwin-like endoglucanases 41 167 IPR036908 -
Cca04g01117 267 Gene3D - 29 163 IPR036908 -
Cca04g01117 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01117 Cca-Chr4 12657184 12660729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01117 12 203 Expansin Gene Family AT4G28250 69.792 1.62e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01117 K20628 - gmx:100804525 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01117 04 12657184 12660729 Cca04g01117 04 12657184 12660729 ECH