Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01108 ATGCCAAATAGCACTGGAAGTTCTACCATGGAGGGGCTTCACGAGTCTCATGATCACAAGGTGTTTGCTGAAAGTGAAGAGTGGGAGAAAGAAAAGGGAAAGGGTCTTGCTTTGAGCTCAGAGAGGAGGCAATGGAAGCCACCTTTTGATGATGCTTCCGTCTCACATAGACCACTCAAGAAAATCCGCAGCCCCCAACGCCAAAACCCAAATCAACCACTTCTATCTCTTCAACCTCCCTCATCAAGAATAGTCTTCCCTTTCGCTTTTGAAGGCTCTCAACACCCAATGCCATTCCCTCACCCTTTTGGAACCACACCAAACTTGCCTCTTTTTCCTCCACCTCTTCACCCAACTCAGCAAATGATATCTTTTGGCCCCCAACACAACATGGGGTATCCACCATTCATAGCCCCGGATTCCACCATGCCACACCAACACCTCcaacatcatcatcagcagcaccatcagcaccagcaacagcaacagcTACTTCAGTACTGGAGCGATGCACTGAATCTAAGTCCAAGAGGGAGGATGATGATGATGGTGAATAGGACTGAAGGGAGACCAATGTTGAGGCCCCAAGTACAGCCTTTGAATGCCACCAAGCTCTATAGAGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAGATTCGTCTCCCTCGCAATAGAACTCGTCTTTGGCTTGGAACGTTCGACACTGCTGAAGACGCTGCTATGGCTTATGATCGTGAAGCCTTCAAGCTCAGAGGAGAAAATGCAAAGCTCAATTTCCCTGAACTCTTTCTCAACAAAGATAAAGCAGAATCATCCACTACTGCTCCTGTTAATGCCGAAGGTTCAACATCAACATCAAAGCAACCTGAAGTGATTCCAGAAGAGACCAACACTGAGAGTGAGGACATGCCACCAACGGTAACAGAAGAGAATGCTGAAACTGAAGAAGGAAATTCACAGCCTCAGGAACTGGTGTGGGGAGAGTGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGGAGTCCTGTGTGGGATGATCTTCTTTTACATTCACAGCTTCCCTTTGTGAATCAAAATCAGCAAGAGTTTCATGATGCTGGTGTTAATCAGACACAACAAGAAGGTTGCAGATATTTTCAACCACAACCTGTGAATCATGGATCCTTGAAGGAATTAATTTCATTTCCTGAAAAATCCATATTTCTGCTGTATTAA 1221 0.4464 MPNSTGSSTMEGLHESHDHKVFAESEEWEKEKGKGLALSSERRQWKPPFDDASVSHRPLKKIRSPQRQNPNQPLLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGTTPNLPLFPPPLHPTQQMISFGPQHNMGYPPFIAPDSTMPHQHLQHHHQQHHQHQQQQQLLQYWSDALNLSPRGRMMMMVNRTEGRPMLRPQVQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAESSTTAPVNAEGSTSTSKQPEVIPEETNTESEDMPPTVTEENAETEEGNSQPQELVWGEWFNAIPAGWGPGSPVWDDLLLHSQLPFVNQNQQEFHDAGVNQTQQEGCRYFQPQPVNHGSLKELISFPEKSIFLLY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01108 406 MobiDBLite consensus disorder prediction 1 79 - -
Cca04g01108 406 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Cca04g01108 406 PRINTS Ethylene responsive element binding protein signature 228 244 IPR001471 GO:0003700|GO:0006355
Cca04g01108 406 SMART rav1_2 205 268 IPR001471 GO:0003700|GO:0006355
Cca04g01108 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 4 371 - -
Cca04g01108 406 Gene3D AP2/ERF domain 205 263 IPR036955 GO:0003700|GO:0006355
Cca04g01108 406 MobiDBLite consensus disorder prediction 12 58 - -
Cca04g01108 406 MobiDBLite consensus disorder prediction 271 322 - -
Cca04g01108 406 MobiDBLite consensus disorder prediction 64 79 - -
Cca04g01108 406 CDD AP2 204 264 IPR001471 GO:0003700|GO:0006355
Cca04g01108 406 ProSiteProfiles AP2/ERF domain profile. 205 262 IPR001471 GO:0003700|GO:0006355
Cca04g01108 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 371 - -
Cca04g01108 406 Pfam AP2 domain 206 254 IPR001471 GO:0003700|GO:0006355
Cca04g01108 406 SUPERFAMILY DNA-binding domain 205 263 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01108 Cca-Chr4 12587225 12589059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01108 50 348 AP2-EREBP Transcription Factor Family AT2G20880 46.774 3.11e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca04g01108 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01108 - - gmx:100811328 552.747