Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01104 ATGACATGCTTCACAGACTCTGTGGCCTTAAAAGCTGTCATAGAGCTGCGCATAGCTGACATAATAGACCGCTATGGTAAACCACTATCATTGTCTCAAATTGTGGAGAACATCGAAGATGCACCCTCCCCGGATGCCTCTTTGTTGCTAAGAGTGTTGAGAGTGATGGTGCGAAGAAAGATCTTCAGTGCAGAACAATCAGAAACTGGAGAAACCCTCTATGGCTTGACACGTGCTTCCAAATGGATCCTACGTGACACAAAGATGACCTTGGCACCCATGTTGCTGCTAGAGAACCACCCCATTCACCTCAACCCTACCCACTACATCAGTGAGATCATCAGAGAAGGGACCAAAAATGGCACTGCCTTCTTCAGGTTTCATGGTCATGAGCAATTTGATATGACGGGTTTGGATCCAGAATACAACAAGTTGTTCAATGAGGGCATGGTGTGCACGGCTAGGGTTGTGTCCAAGGCTGTCATCAGTGGCTACAAAGATGGGTTCAACAAGATTAAGTCCTTGGTTGATGTGGGAGGAGGCATTGGAGGCTCTCTCTCCGAGATTGTTAGGGCTTACCCTCACATCAATGCCATCAACTTTGACTTGCCTCATGTGGTTGCCACTGCTCCCAAGTATGATGGAATCACCCATGTTGGTGGAGACATGTTTGTGTCCATTCCCAGTGCTGATGCTATTTACATGAAGTGGATCCTGCATGACTGGAGCGACGAGCACTGCGTGAAGATATTGAAAAACTGCAGGAAGGCAATACCAGAGAAGACCGGAAAAGTGATCATTGTGGATCACGTGCTGCGACCTGAAGGGAACGAACTCTTCACCGACGTTGGCATTGCATTTGACATGATGCTTCTCGCTCACAACGCTGGTGGCAAAGAGAGGACCGAGGAGAATTGGAAGTGGCTATTCAAGGAAACAGGATTCGCACGTTACAACATCATCAAGATCAACGCTCTCCCATCCATCATTGAGGCTTTTCCAATTTAA 1008 0.4742 MTCFTDSVALKAVIELRIADIIDRYGKPLSLSQIVENIEDAPSPDASLLLRVLRVMVRRKIFSAEQSETGETLYGLTRASKWILRDTKMTLAPMLLLENHPIHLNPTHYISEIIREGTKNGTAFFRFHGHEQFDMTGLDPEYNKLFNEGMVCTARVVSKAVISGYKDGFNKIKSLVDVGGGIGGSLSEIVRAYPHINAINFDLPHVVATAPKYDGITHVGGDMFVSIPSADAIYMKWILHDWSDEHCVKILKNCRKAIPEKTGKVIIVDHVLRPEGNELFTDVGIAFDMMLLAHNAGGKERTEENWKWLFKETGFARYNIIKINALPSIIEAFPI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01104 335 SUPERFAMILY "Winged helix" DNA-binding domain 3 86 IPR036390 -
Cca04g01104 335 Pfam O-methyltransferase domain 109 316 IPR001077 GO:0008171
Cca04g01104 335 PIRSF O-mtase 1 335 IPR016461 GO:0008168
Cca04g01104 335 PANTHER O-METHYLTRANSFERASE 2 334 IPR016461 GO:0008168
Cca04g01104 335 Pfam Dimerisation domain 9 57 IPR012967 GO:0046983
Cca04g01104 335 CDD AdoMet_MTases 175 272 - -
Cca04g01104 335 Gene3D - 1 83 IPR036388 -
Cca04g01104 335 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 2 334 - -
Cca04g01104 335 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 332 IPR029063 -
Cca04g01104 335 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 334 IPR016461 GO:0008168
Cca04g01104 335 Gene3D Vaccinia Virus protein VP39 85 335 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01104 Cca-Chr4 12511565 12514828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01104 8 321 Monolignol Biosynthesis Gene Families AT5G54160 39.752 2.27e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01104 K22588 - gmx:100800801 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01104 04 12511565 12514828 Cca04g01104 04 12511565 12514828 ECH