Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01099 ATGGGTTGTTGTGTCTCAACAAGCAGTAAGAGTACTTGTAGCAGCAAGAGCAATGGGGACATGGTGTCTCCATCTTGCTTAGAAATTGGATTCTGTGGCCAAAAGAGAACAAGGAGAACATTCTCTGATCATGTTATTTCTCTTCATCATTTGCCATCTTTGCCTAGCAGAATTTTCACTAATGGAAAGAGCCGGGGTTCGTGCATATTTACACAGCAGGGCCGCAAGGGCATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATACAATCTTTTGTGGTGTCTTTGATGGTCACGGTCCACATGGTCATCTTGTTGCACGCAAAGTGAGGGATGCCTTGCCGATTAAACTGCTTTCATTTTTGCATTCTTGTGAATCGAAGCGAAATGGTTCAGGTAAAACTTGCTTCAAAGGGAATGTAAAACCTGAGGGTGGTGACTCTGAGAAGGATTGCTCTGCTGAGGATAAACTGAACTCTACGTGGAGAGAGGCTTTCATGAAGGCTTACAAGGCTATGGACAAGGAGCTCAGGTCTCATCCAAATCTGGATTGCTTCTGTAGTGGGAGCACTGCTGTGACTATAGTGAAGCAGGGTTTAAATCTGTTCATGGGATATATTGGTGATTCCCGGGCAATCATGGGATCCAAGGATAGCAATGACTCCATGGTGGCTATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGGGAAGCAGAAAGAATTAAGCGGTGCAAAGGTAGGGTATTTGCTTTACAAGATGAGCCTGAAGTGCCTAGGGTGTGGTTGCCTTTTGATGATGCACCAGGACTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAAGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTTACAGACAGAGATCAGTTCATTGTTCTTGCCTCAGATGGGGTGTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAGATAGTATCTTCAGCACCAACAAGATCATCGGCGGCGAGGATTCTGGTAGATTCTGCTGCCAGGGAGTGGAAACTCAAGTACCCTACTTCAAAGATGGATGACTGTGCTGTAGTGTGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATTATGATGAACAAGGCTTTTCTTCTGCCACCATCCAGAGCAACCATTCTGGTAACCCCATTGAGTCAGATGATGGACAAAAGTCTGAGCCATCATTGCAGAGGAACTTCACTGTAAGATCCTCAGAAGAAAATGAGACTAATGGAGCACCACCTGTTGATGCTGAAGATGGAACATCATCAACTGATGATCAAAACTGGTCAGGTTTGGAAGGCGTCACTCGTGTAAACTCACTAGTCCAGCTTCCTAGATTTTCTGAGGAAAGGCCAAACTCTTGA 1413 0.4459 MGCCVSTSSKSTCSSKSNGDMVSPSCLEIGFCGQKRTRRTFSDHVISLHHLPSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMIVWEDFMSEDTIFCGVFDGHGPHGHLVARKVRDALPIKLLSFLHSCESKRNGSGKTCFKGNVKPEGGDSEKDCSAEDKLNSTWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTIVKQGLNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETNGAPPVDAEDGTSSTDDQNWSGLEGVTRVNSLVQLPRFSEERPNS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01099 470 MobiDBLite consensus disorder prediction 380 470 - -
Cca04g01099 470 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Cca04g01099 470 Gene3D - 58 378 IPR036457 -
Cca04g01099 470 MobiDBLite consensus disorder prediction 1 20 - -
Cca04g01099 470 PANTHER ALPHABET, ISOFORM E-RELATED 1 458 - -
Cca04g01099 470 SUPERFAMILY PP2C-like 58 372 IPR036457 -
Cca04g01099 470 SMART PP2C_4 50 368 IPR001932 -
Cca04g01099 470 CDD PP2Cc 65 370 IPR001932 -
Cca04g01099 470 Pfam Protein phosphatase 2C 151 347 IPR001932 -
Cca04g01099 470 MobiDBLite consensus disorder prediction 381 470 - -
Cca04g01099 470 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01099 Cca-Chr4 12344704 12350067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01099 1 470 PP2C-type Phosphatase Gene Family AT1G03590 69.602 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01099 - - gmx:100798340 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01099 04 12344704 12350067 Cca04g01099 04 12344704 12350067 ECH
Cca10g00842 10 9683824 9688113 Cca04g01099 04 12344704 12350067 PCT