Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01094 ATGGGTTGGAAGAGATCTGCTTTGGAGTGCGGGAGAGTAGAGATCTATGGACAAGTTCTATTGGGATTTTTGTTGATCTGCACAATTCAGATTTCAAGTGCAGTCACTGATCCCACTGATGTTGCTGCAATTAATAACTTGTATATCTCATTGGGATCCCCTGTTCTCCCTGGGTGGGTTGCTAGTGGAGGGGATCCATGTGGACAAGGGTGGCAAGGCATTCAGTGTAATGGATCATTCATACAAAAAATAGTTCTAAATGCTGCAAATTTGGGAGGAGAACTGGGTGATACACTGTCAACTTTTGTTTCAATCTCTGTAATTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCCAATTTGCCAGTGACCTTGAAAAACTTTTTTCTTTCAGCCAACCAGTTCACTGGAAGCATTCCGATCTCTTTATCCACTTTGACTGGACTGACAGACATGTCTCTTAACAACAATCTTTTAAGTGGAGAATTACCAGATGCTTTTCAGTCACTTACACAATTGATCAATCTAGATTTATCTCATAATAATTTGAGCGGGGAATTGCCTCCTTCTATGGATAGCTTGTCGTCTCTGACCACCCTACGCTTACAGAACAATCAGTTGTCTGGGACACTTGATGTGTTACAAGACCTTCCTCTGAAAGATTTGAATGTTGAGAACAATCAGTTTGCTGGCCCAATACCTCCAAAGTTACTAAGCATCCCTAACTTCAGACAAGCTGGAAACCCATTTAATGTTAATGGTACTACAACTCCTGCTTCTTCACCTCGCTCCCCAGCAATAGTACCACCAGGATCTCCGGCTTCTGGGGCACCGACAGGAACTCCGGCTTCTGGGACACCATCTTCTGGCGGCCGTGTACCTACTAAACAAGCTGATGGACCAACTGCAGCAAATGAATCACATACCGGGAAATCCAAAAAAACCACAAAAAGGGTGGTTTGGATATCTATTGGTAGTGTATTGGGATTCATTATTTTGTTACTAGGATTCATTCTCTTTATTCCAAGATGTAGCAGAAGAGAACGGGATGACAGAAGGTCCAAGCGACATCAAATTGGTACATATGGTGGTGAAAGACAAAGTGCTAGGGATTACGGGACTGCAGTCCAACCGCCTAGTCAAATGGAAAAAGCACCAGTAGCGGGTGTTTCAAGGCCAAAAGAGAATCATCAAGCAGAGACCAGGAGAGTTGGGGTTAATCCAAATCCACAGGGTGATCAAAAGAAGGATGTGCAGAGAATGGAGGCAATACCAAAGCCAAGAGATCATGAGATAGATATGAGTGCACTAGAAGTATATTCAGTGcctcctcctccacccccacctccacctccacctccacctccacctccacctccacctccgcctcccccacctccaccACCTCCTACTACTGAGAGGGTGATTGTGGGGCCAGCCACATCCCGCAGAGAGACTAATGCCAATCCATCCATAAGAAGTTCAGTTCCTCCTCCCACTTTTGCAAAATTTTTCACCATTGCATCCCTTCAACAGTTTACAAATAGTTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTGGGTAGTGTGTATAGAGCAGAGCTTCCTAACGGCAAGTTTCTAGCTGTGAAGAAACTGGACAAGAGAGCCTCTGATCATCAGAAGGATGATGATTTTCTTGAATTGGTAAATAGTATTGACAGAATACGCCATGCAAATGTTGTTGAGCTTGTTGGATACTGTTCAGAGCACGGTCAAAGGCTTCTGATCTATGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCAGATGATGACTTCAAAACAAGACTCTCATGGAATGCTCGTATTCGGATAGCACTTGGAGCAGCTAGAGCTTTAGAATATCTGCACGAGCTATGTCAGCCACCTGTAGTACATAGAAATTTGAAGTCTGCCAATGTTCTCCTTGATGATGATCTATCTGTGCGAGTCTCTGATTGCGGTTTAGCTCCATTAATAGCTTCGGGATCTGTCAGTCAGCTCTCGGGGAACCTTCTCACTGCTTATGGCTATGGAGCTCCTGAATTTGAGTCTGGAATTTACACGTATCAAAGTGATGTGTACAGCTTTGGAGTGATCATGTTAGAACTTATGACTGGTCGTCAGTCCCATGATAGGACGCGTCCACGAGGGGAGCAATTTCTGGTCAGATGGGCAGTTCCCCAACTTCATGATATTGATGCATTATCAAGAATGGTTGATCCTTCTTTAAATGGAGATTACCCGGCAAAATCATTGTCAAATTTTGCAGACATTATTTCTAGATGCCTTCAGTCCGAGCCAGAATTTAGGCCAGCAATGTCCGAGGTCGTCCTATACTTGCTAAATATGATAAGGAGGGACTCTTAG 2406 0.419 MGWKRSALECGRVEIYGQVLLGFLLICTIQISSAVTDPTDVAAINNLYISLGSPVLPGWVASGGDPCGQGWQGIQCNGSFIQKIVLNAANLGGELGDTLSTFVSISVIDLSNNNIGGNIPSNLPVTLKNFFLSANQFTGSIPISLSTLTGLTDMSLNNNLLSGELPDAFQSLTQLINLDLSHNNLSGELPPSMDSLSSLTTLRLQNNQLSGTLDVLQDLPLKDLNVENNQFAGPIPPKLLSIPNFRQAGNPFNVNGTTTPASSPRSPAIVPPGSPASGAPTGTPASGTPSSGGRVPTKQADGPTAANESHTGKSKKTTKRVVWISIGSVLGFIILLLGFILFIPRCSRRERDDRRSKRHQIGTYGGERQSARDYGTAVQPPSQMEKAPVAGVSRPKENHQAETRRVGVNPNPQGDQKKDVQRMEAIPKPRDHEIDMSALEVYSVPPPPPPPPPPPPPPPPPPPPPPPPPPPPTTERVIVGPATSRRETNANPSIRSSVPPPTFAKFFTIASLQQFTNSFSQENLIGGGMLGSVYRAELPNGKFLAVKKLDKRASDHQKDDDFLELVNSIDRIRHANVVELVGYCSEHGQRLLIYEYCSNGSLYDALHSDDDFKTRLSWNARIRIALGAARALEYLHELCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELMTGRQSHDRTRPRGEQFLVRWAVPQLHDIDALSRMVDPSLNGDYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMIRRDS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01094 801 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cca04g01094 801 MobiDBLite consensus disorder prediction 250 318 - -
Cca04g01094 801 MobiDBLite consensus disorder prediction 250 264 - -
Cca04g01094 801 MobiDBLite consensus disorder prediction 442 476 - -
Cca04g01094 801 MobiDBLite consensus disorder prediction 441 477 - -
Cca04g01094 801 Gene3D Ribonuclease Inhibitor 38 259 IPR032675 -
Cca04g01094 801 MobiDBLite consensus disorder prediction 349 423 - -
Cca04g01094 801 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 800 - -
Cca04g01094 801 Gene3D Transferase(Phosphotransferase) domain 1 597 801 - -
Cca04g01094 801 Gene3D Phosphorylase Kinase; domain 1 482 596 - -
Cca04g01094 801 MobiDBLite consensus disorder prediction 279 311 - -
Cca04g01094 801 ProSiteProfiles Protein kinase domain profile. 519 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01094 801 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Cca04g01094 801 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Cca04g01094 801 SUPERFAMILY Protein kinase-like (PK-like) 493 793 IPR011009 -
Cca04g01094 801 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Cca04g01094 801 SUPERFAMILY L domain-like 54 244 - -
Cca04g01094 801 PANTHER OS01G0253100 PROTEIN 25 800 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01094 Cca-Chr4 12240038 12247545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01094 31 800 Strubbelig Receptor Gene Family AT4G03390 60.719 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca04g01094 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01094 - - ahf:112737625 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01094 04 12240038 12247545 Cca04g01094 04 12240038 12247545 ECH
Cca10g00832 10 9585512 9592649 Cca04g01094 04 12240038 12247545 PCT