Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01083 ATGGCCATTGGTTCCTTCTTCATCAGGGCCTCCAGGGTTCTCAATTCCTCCAACTTTCTGCTTCTCTGCACTCTCAGTGGTGGTGGTGTGGTGGCATACTCAGAATCACAATCAGGAGCTGAACGTCCTAGTATTGATTCTAATGATCCCTCCAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGATCTGGATGCTTCATTATATGATGTTCAAGTTGTTTCACCTCGTAACTACTTTGCATTTACTCCCTTGTTACCCAGTGTTACTTGTGGAACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATTAAAAAGAGAAAAGGAGAGATAAACTTTTGGGAGGCTGAATGTGTCAAGATTGATTCTTCAAACAAAAAGGTTTTTTGTCGGTCCAATATTGAAAACTTGGTGGGAAGTGGTGAATTTTCCTTGGACTATGACTTCTTGGTTGTAGCAATAGGAGCACAAGTGAATACTTTTAACACCCCTGGTGTCAAGGAGAATTGTCATTTTCTGAAGGATGTTGAGGATGCTCAAAAGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGGCTGTTCTTCCTAGTCTATCTGATGAAGAGCGAAGGGCAAATCTTCATTTTGTAGTTGTTGGAGGAGGTCCAACTGGTGTGGAATTCGCTGCAGAGCTGCATGATTATGTCCATGAAGATTTAATCAAGTTATATCCAACTGTTAAAGATAAAGTGAAAATATCGTTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAAAAGTTTATGAGAGATGGGATAGAAGTTCAAACAGGATGCCGGGTTCTTAGTGTTAAAGACAAGGATATTACAGTGAAGGTGAAATCGACAGGGGAGCTTTGCTCAGTGCCTCATGGGTTGGTTGTTTGGTCAACTGGCATTTCAACTCTTCCAGTTGTAAGGGACTTTATGCAAGAAATTGGTCAGGCTAAAAGGCATGTACTAGCAACTGATGAATGGTTGCGTGTGAAGGAATGTGAAGATGTGTATGCCATTGGTGATTGTTCTAGCATAACTCAACGTAAAATCATGGATGATATCACAGCCATATTTGAGGCTGCAGACAAAAATAAGTCAGGCGCCTTAACTATTGAAGACTTCCAGGAGGTGATGGATGACATTGTCTTAAGATATCCACAAGTTGAACACTATCTAAAGCAGAAACATGTGCGTGATTTTACCACACTCTGGAAAGATTTACAAGGGAAAGAATGCAAGGAAATAGACATAGAATCGTTTAAGCTGGCCCTTTCTCATGCAGATTCACAGGTGAAGAGTCTGCCAGCAACTGCACAGGTTGCTGCCCAACAGGGTGCATATCTAGCTAGATGCTTCAACCGAAGGGATCATGTTGAAGAGCATCCTGAAGGTCCTCGGCGATTTAGAAAATCTGGCCGTCATAAGTTTCTTCCCTTCCGGTATAGGCATTTGGGGCAATTTGCTCCACTTGGTGGTGAGCAAGCAGCTGCAGAACTTCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGTTGGCGCACAAGGGTCTTGGTCGTGTCTGATTGGACAAGAAGATTCATATTTGGCAGAGATTCGAGTCGAGTTTAA 1722 0.4251 MAIGSFFIRASRVLNSSNFLLLCTLSGGGVVAYSESQSGAERPSIDSNDPSKKKVVVLGTGWAATSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEINFWEAECVKIDSSNKKVFCRSNIENLVGSGEFSLDYDFLVVAIGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCFEKAVLPSLSDEERRANLHFVVVGGGPTGVEFAAELHDYVHEDLIKLYPTVKDKVKISLIQSGDHILNMFDERISSFAEQKFMRDGIEVQTGCRVLSVKDKDITVKVKSTGELCSVPHGLVVWSTGISTLPVVRDFMQEIGQAKRHVLATDEWLRVKECEDVYAIGDCSSITQRKIMDDITAIFEAADKNKSGALTIEDFQEVMDDIVLRYPQVEHYLKQKHVRDFTTLWKDLQGKECKEIDIESFKLALSHADSQVKSLPATAQVAAQQGAYLARCFNRRDHVEEHPEGPRRFRKSGRHKFLPFRYRHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01083 573 SUPERFAMILY FAD/NAD(P)-binding domain 213 371 IPR036188 -
Cca04g01083 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Cca04g01083 573 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 48 573 - -
Cca04g01083 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 270 IPR036188 -
Cca04g01083 573 Gene3D - 42 427 - -
Cca04g01083 573 Gene3D - 443 573 - -
Cca04g01083 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Cca04g01083 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Cca04g01083 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Cca04g01083 573 SUPERFAMILY EF-hand 332 457 IPR011992 -
Cca04g01083 573 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Cca04g01083 573 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Cca04g01083 573 PANTHER NADH DEHYDROGENASE 48 573 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01083 Cca-Chr4 12120913 12126327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01083 5 573 Chloroplast and Mitochondria Gene Families AT4G21490 62.457 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01083 K03885 - gmx:100793566 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01083 04 12120913 12126327 Cca04g01083 04 12120913 12126327 ECH