Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01082 ATGCGTTGGTCTTCCTTCTATCACACTGCCTCGAGGCTTTTCCATGAGTATCCATCATGGTCCAAGTCTGTTATTGTATGCACTACCATCAGTGGTGGAGGATTAGTGGCATATTCCGATGCCAAACCAGAACATGGTGAAGAACCTATTCAAAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAATATCAAAAGCAATTCCTATGATATTCATGTGGTTTCACCTCGTAACTATTTTGCATTCACTCCATTGCTACCAAGTGTCACGTGTGGCACAGTGGAAGCAAGGAGCATCGTTGAACCCATTCGCAGTATCACCCGGAGGAGCGGTGTAAACATTCATTTCAGTGAAGCTGAATGCTATAAGATTGATCACAAGAACAACAAAGTCTTTTGCCGTTCTGGTAAAGACAGGAAGACAGGTGGCGAAGACGAGTTTTCCATTGATTATGATTACCTCGTAATAGCTATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTTATGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAGAATCCGTCAGACAGTGATTGACCTCTTTGAAAGAGCTAGCCTTCCTTCTGTATCAGTGGAAGACAAGAAAAAACTTCTGAGTTTTGTAGTTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTTCTGCTGAGCTTCATGACTTTGTACATGAGGATATAGCTAAGTTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGATCATATCCTAAACATGTTTGACAAGCGAATAACAGAATTTGCTGAACATAAGTTCGCCAGAGATGGGATTGATGTGAAGTTGGGATCTATGGTTGTCAAAGTTAGTGAAAACGAAATCACTGCCAAAGAAAGGTCAACTGGTCAAGTTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCAGAAATAGTTGAATTCATGAAGCAGCTTGGCCAGACTAATAGACGTGCCTTGGTCACTGATGAATGGCTAAGGGTGGAAGGATGTGACAATGTCTATGCTCTAGGTGATTGTGCCACTATAAATCAACGTAAAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACGATTCTGGGAAGTTAGATCTTCAAGAATTTAAAGAAGTTGTTAATGACATCATTGAGAGGTACCCACAAGTGGATATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAACCTAAAGACAGTGCTATTGTAGTGGACATTGAATACTTTAAACAAGCACTTTCCAAGGTAGACTCCCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTTTATCTTTCAGACTGTTTCAACCGCATGGAGTTGTGTGAGAAGTATCCTGAAGGGCCTCTCAGGTTTAGGGGAGTTGGACGCCATAGGTTTCGTCCCTTCCGGTACAAGCATCTTGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTTTGGTATTCTGTGTATACAAGCAAACAAGTGTGCTGGAGGACAAGGGCTTTGGTGGTTGGTGACTGGTGTAGGCGATACACATTTGGCAGAGACTCAAGTCGAATCTAA 1722 0.4309 MRWSSFYHTASRLFHEYPSWSKSVIVCTTISGGGLVAYSDAKPEHGEEPIQKKKVVVLGTGWAGTSFLKNIKSNSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRSITRRSGVNIHFSEAECYKIDHKNNKVFCRSGKDRKTGGEDEFSIDYDYLVIAMGGRSNTFNTPGVYEHAHFLKEVDEALRIRQTVIDLFERASLPSVSVEDKKKLLSFVVVGGGPTGVEFSAELHDFVHEDIAKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEHKFARDGIDVKLGSMVVKVSENEITAKERSTGQVVSIPHGMVVWSTGIGARPEIVEFMKQLGQTNRRALVTDEWLRVEGCDNVYALGDCATINQRKVMEDIAVIFSKADKNDSGKLDLQEFKEVVNDIIERYPQVDIYLKKNQMKDMASLLKKPKDSAIVVDIEYFKQALSKVDSQMKNLPATAQVAAQQGVYLSDCFNRMELCEKYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVCWRTRALVVGDWCRRYTFGRDSSRI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01082 573 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Cca04g01082 573 Gene3D - 45 445 - -
Cca04g01082 573 PANTHER NAD(P)H DEHYDROGENASE B2 71 573 - -
Cca04g01082 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Cca04g01082 573 SUPERFAMILY FAD/NAD(P)-binding domain 220 372 IPR036188 -
Cca04g01082 573 PANTHER NADH DEHYDROGENASE 71 573 IPR045024 GO:0003954|GO:0006116
Cca04g01082 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Cca04g01082 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Cca04g01082 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Cca04g01082 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 369 - -
Cca04g01082 573 SMART efh_1 379 407 IPR002048 GO:0005509
Cca04g01082 573 SUPERFAMILY EF-hand 368 459 IPR011992 -
Cca04g01082 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Cca04g01082 573 Gene3D - 446 555 - -
Cca04g01082 573 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01082 Cca-Chr4 12113611 12119695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01082 1 573 Chloroplast and Mitochondria Gene Families AT4G21490 66.667 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01082 K03885 - gmx:100820044 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01082 04 12113611 12119695 Cca04g01082 04 12113611 12119695 ECH