Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01076 ATGGGAAGAGTTCCTTGCTGCGACAATAATGGACTCAAGAAGGGTCCGTGGACACCAGAGGAAGACCTTAAACTCATCAACCACATTCAGATTCATGGACCAGGCAATTGGAGAGCGCTCCCTAAAAGTGCTGGTCTAGAAAGGTGTGGTAAGAGTTGTCGCCTTCGATGGACAAATTACCTGAGACCCGATATAAAGAGAGGAAGATTCTCCCTAGAAGAAGAAGATATTATTATTCAGTTGCACAGTATCTTGGGAAACAAATGGTCAGCTATAGCAGCTAGGTTACCAGGAAGAACTGATAATGAAATAAAGAATTATTGGAACACCCACATTAGAAAGAGGTTGCTTCGAATGGGAATTGACCCAGTTACACATGCCCCACGCCTTGACCTACTTGACATGTCCTCTATTTTAAGGTCAGTGTTAGGGAACCCCTCCCTTTTGAACATGCAAGGCTTGTTAGGTGCCCATGTTTTGATGAACCAAGGTTTCATGAACTTGTCTGCCACTGCCTCTCTTCTATCCATCAAGAACGATGAGAACCCTAATTTGGCTTCACAAAACTATGCACAAAGCCAAGGTGCCCCACCACAAGACTTAACTCAGTTTCAAAGGCCTGTAGAAGGTTTCTCGGGAAACTTGAGCTGTTCAAGTTCTCCTCCACTGAGTTCAACTCCTGATTTGGGTGAGAATGAGAACCTTGTTTTGCAACAAAACCAAGTTGGTTTGTTAGGGAATTACCCTGCTTTGGTGCACTCCATGAACAATGCAAGCCAAAACATGGGGTTTGATTCATCATCCACGTATGTGAAAAGGGGAGTGGAGGAAGAAAAGGATAGCTTTTGTGGTGACTTGTTTGAGTTCGAAATTCCAGAGAGTTTTGACATTGGTGACATTTTTTGTAGTGTCCCACAAACTTTTTAG 927 0.4347 MGRVPCCDNNGLKKGPWTPEEDLKLINHIQIHGPGNWRALPKSAGLERCGKSCRLRWTNYLRPDIKRGRFSLEEEDIIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSVLGNPSLLNMQGLLGAHVLMNQGFMNLSATASLLSIKNDENPNLASQNYAQSQGAPPQDLTQFQRPVEGFSGNLSCSSSPPLSSTPDLGENENLVLQQNQVGLLGNYPALVHSMNNASQNMGFDSSSTYVKRGVEEEKDSFCGDLFEFEIPESFDIGDIFCSVPQTF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01076 308 CDD SANT 69 112 IPR001005 -
Cca04g01076 308 SMART sant 66 114 IPR001005 -
Cca04g01076 308 SMART sant 13 63 IPR001005 -
Cca04g01076 308 CDD SANT 16 61 IPR001005 -
Cca04g01076 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca04g01076 308 Gene3D - 69 116 - -
Cca04g01076 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca04g01076 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca04g01076 308 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca04g01076 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca04g01076 308 PANTHER TRANSCRIPTION FACTOR MYB41 1 296 - -
Cca04g01076 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca04g01076 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 296 - -
Cca04g01076 308 Gene3D - 13 66 - -
Cca04g01076 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01076 Cca-Chr4 12031791 12033059 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01076 1 194 MYB Transcription Factor Family AT4G21440 66.176 3.89e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01076 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01076 K09422 - gmx:100817731 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01076 04 12031791 12033059 Cca04g01076 04 12031791 12033059 ECH
Cca10g00783 10 9086173 9087723 Cca04g01076 04 12031791 12033059 PCT